Gene detail

Gene detail information of Glyur000107s00007260

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33080.2	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
NR	XP_004501452.1	0	PREDICTED: serine/threonine-protein kinase CBK1-like [Cicer arietinum]
COG	YP_006921214.1	9.00E-23	serine/threonine-protein kinase Sps [Thermacetogenium phaeum DSM 12270]
Swissprot	tr\|Q9LE81\|IRE_ARATH	6.00E-75	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|V7AW65\|V7AW65_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08853.1}

Sequence

Transcript Sequence

>Glyur000107s00007260.1
CATGCTTATGCATCTTCCTAAAACAGTCTCTTGTCTGATGCAGATCTTTTGTTCACCTTGTGTTTTGGAAATTCTGATCTTGACAGATTTTTTTTTTAATTCTAGGCGTTGGATTTTAGAAAGAAAATTAGCTTCTTCGGATGTGCCAAATGAGGAACGCATCAACCTAATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGCTTAAAAAGGCACAAGATTTGTGTTAATGATTTTGAGCTTTTGACCATCATTGGAAGGGGGGCCTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCTTTTCAGGATGCCGAATACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGACATTATGACTCTGCTGATGAGGGAAGACACCCTAAGTGAGAATGTTGCTAGATTTTACATTGCGCAGAGTGTTCTGGCCATAGAGTCTATTCACAAACACAATTACATTCACAGAGATATTAAACCCGATAACCTACTTCTGGATAAAAAGGGNCACATGAAGCTCTCTGATTTTGGCCTTTGTAAGCCTATCGATTGTATTACCTTGTCTACACTGCATGAAAATCAGACCATGGATGATGAAACTTTGGCAGAGCCTATGGATATTGATGGACGTTTTCCTGATGCGGACAATCGAAGCAGCTGGAGAAGTCCACGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAGTTGTTCACAGAGTTCCTTGTTTCTNGTTGCAAGGCATTTTCAACAGTGGGGACACCAGATTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATCACCACATGCAGAAAGATTGTTCATTGGAGAAATCATCTAAGATTTCCAGAAGATGCCCAGTTAACAATTGAGGCTAAGGATCTAATCTACAGATTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCAAATGAAATAAAGGGTCATCCTTGGTTCAGGGGCGTGGAGTGGGATAAACTGTATGAAATGGATGCAGCATTTAAACCACAAGTCAATGGGGAACTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCAGAATCAGCAAGAACTGGGTCTGGGTCCTCGAGAAAGATGCTTCTAACTCCNAAAGATCTAAACTTTGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAAGAAGGGCTTCGTGAAGGGCTTCGTCAGTCTTTTGGTGATTCCATGCAAGAATATGCTTCCAAACGAACGGCTGATGAAACAAGTTTACAAATGCTCGCGTCGTCTGGAGATCCCATGTTACCATAAATGAACTTTTATTGCAAACTGAAGCCCATCCATCGTGTTGAGTTTTTTGAGTGCTTGCTTTGGCTTTAAATATTTGGCCTGAGAACATCTATTATAGTACTTCAATTCCCATGCCATTTGCAAGAACAATTGTGTACAGCAAGTAGTTGAAACAGCATTTCAAAGCTTGTAGGACAACACCATGGGTGTGTGTGTATTTGAATTTTCAAATTATTAGGAAGTGNGTGTTGTGCAACTGAGTGCTCCCTGTGCTGCTGGCTGCCCAGGTTGGCTGTGGAAGACTTGCCTTCTCTAGTGGCAGTTGCTGGTTAANTTTTAGTTGTTATGGACAAATTACTGAGGAACTACAAAGAAAAGCATCCTGATAAAATTATTCGATGTGATGTGTACATTTATTGGAACATAGCAAAGATTTAACTATAATAGAAAGACTATGTTTGGGGATGGATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	219555	226681	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007260.1	PF00069.20	Pkinase	80	231	1.60E-42
Glyur000107s00007260.1	PF00069.20	Pkinase	296	397	1.20E-18
Glyur000107s00007260.1	PF00433.19	Pkinase_C	415	464	4.30E-06
Glyur000107s00007260.2	PF00069.20	Pkinase	93	215	1.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.465
SRR1783600	control	35.337
SRR1783602	moderate drought stress	40.165
SRR1811619	moderate drought stress	39.821

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.178
DRR006520	Root Summer glycyrrhizin high producing strain	65.454
DRR006521	Root Winter glycyrrhizin high producing strain	29.421
DRR006522	Root Winter glycyrrhizin high producing strain	28.311
DRR006523	Root Summer glycyrrhizin low producing strain	74.243
DRR006524	Root Summer glycyrrhizin low producing strain	72.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.704

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.789
SRR2868004	Drought Stress (root)	70.024
SRR2967015	Control (root)	84.587

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.569
SRR9715740	Leaf	34.397
SRR9715741	Leaf	33.645
SRR9715739	Root	6.536
SRR9715742	Root	21.410
SRR9715743	Root	20.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.033
SRR8749028	MeJA induced 9h	28.191
SRR8749029	MeJA induced 9h	12.088
SRR8749030	Uninduced	8.440
SRR8749031	Uninduced	3.048
SRR8749032	Uninduced	2.588

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.703
SRR8400027	Control - Root	76.265