Gene detail information of Glyur000107s00007259 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32270.1 | 6.00E-15 | Ubiquitin-like superfamily protein |
| NR | XP_003603371.1 | 5.40E-23 | hypothetical protein MTR_3g106830 [Medicago truncatula] |
| trEMBL | tr|G7JAI3|G7JAI3_MEDTR | 8.00E-22 | Uncharacterized protein {ECO:0000313|EMBL:AES73622.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00107 | 217820 | 218399 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000107s00007259.1 | PF00240.18 | ubiquitin | 10 | 63 | 4.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.970 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.773 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.549 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.876 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.501 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.657 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.957 |
| SRR2868004 | Drought Stress (root) | 11.103 |
| SRR2967015 | Control (root) | 12.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.603 |
| SRR8749028 | MeJA induced 9h | 4.907 |
| SRR8749029 | MeJA induced 9h | 9.046 |
| SRR8749030 | Uninduced | 4.968 |
| SRR8749031 | Uninduced | 5.246 |
| SRR8749032 | Uninduced | 6.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.046 |
| SRR8400027 | Control - Root | 0.000 |