Gene detail

Gene detail information of Glyur000107s00007253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33110.2	2.00E-155	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004501447.1	0	PREDICTED: (S)-coclaurine N-methyltransferase-like isoform X2 [Cicer arietinum]
COG	YP_001964606.1	7.00E-118	cyclopropane-fatty-acyl-phospholipid synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Swissprot	tr\|Q5C9L6\|CNMT_THLFG	6.00E-128	(S)-coclaurine N-methyltransferase
trEMBL	tr\|A0A067KCV9\|A0A067KCV9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP34061.1}

Sequence

Transcript Sequence

>Glyur000107s00007253.1
ATTATCGCAAGACAAGAAGAAGAAAAGAACCGCTCACGGGCACGGGTGCGGACGGTGGTTGGTTTGAGGATGGAAGGGATAATGCAGTTACCGTATGACAAGGCGGTGAAGCTGATGCTGGCTTCACTGGAACGCAACTTGCTCCCTGACGCTGTTATCAGGAGACTCACGCGTTTGCTGTTGGCCACTCGCCTTCGCTCTGGTTACAGGCCTTCCTCTGAACTTNAACTCTCTGACCTTGTCCACTTTGCACATTCTTTACAAGAGATGCCTATTGCAATCAACACTGATAAGCCCAAATCTCAACATTATGAATTACCTACCTCTTTCTTCAAGCTGGTTCTCGGGAAGAATCTCAAATATAGTTCTTGTTATTTCTCTTCTGCCTCAAAGACGCTGGAAGATGCTGAAGAAGAAATGTTGAAACTTTACTGCGAGAGATCGAACCTGAAAGATGGTCAAACAGTTCTTGATGTCGGGTGCGGTTGGGGATCACTGGCATTATACATTGCCAAGAAGTACAGCAATTCCAGGGTCACAGGAATCTGCAATTCCACAACTCAAAAAGCTTATATTGAGGAGAAATGCCGGGATCTGCAGCTGCAAAATTTGGATATCATTGTTGCAGACATTAGCATATTTGAAATGGAAGCTTCTTATGACAGAATATTTTCCATAGAAATGTTTGAGCATATGAAGAACTATAAAGATCTTCTCAAGAAGATATCCAAATGGATGAAAGAGGATGGCCTTTTATTTGTTCACCATTTCTGCCACAAAGTATTTGCCTACCACTTTGAGGACAAAAATGATGATGATTGGATTACGAGATACTTCTTTACTGGAGGAACAATGCCTGCAGCAAATCTACTTCTTTATTTCCAAGATGATGTTACTGTCGTCAACCATTGGCTGGTAAATGGGAAACACTACGCACAGACCAGTGAAGAGTGGCTCAAGAGAATGGATCAGAACATGACTTCCATCAAGCCAATTATGGAATCAACGTACGGCAAGGATTCAGCTACCAAGTGGACTGTCTATTGGAGAACATTCTTCATAGCTGTAGCAGAACTTTTTGCATACAATAACGGCGAAGAATGGATGGTTGCACACTTTCTTTTCCAAAAGAAATAAAATAGGCCGAAACCGAATCTCTTTCAGGATTGGGGGGGGGGGGGGGGAACTGCTCAACGAGGTTGCTTACTTCAATAATTGTTGTATGCTTTTATTTGGTTGTCTGCAAAACATAGCTCGGCATGGAGTTCTCTGCTAGAACTCTGGATTGAAGACATGGGGAAAATGCAAATCAATCTAAGCCATCGTCNCTCAACCCATTGTGAACCCAGTGTCAAGTTATCTTCAAACGTTTGTGAACCAAGCGTAGGTCTATTTCAAGGTCAACCCATTATGANCAAACTTGTCTTCATTAAACTCCAGGTCTATTTCGAAATGGCATTCTGTTTGTGTTTCGTTCTTTCAACTTCGTATCCATTGTGTTCTGTTCTTTCCATTTTGAACTTCTCGTGTCCTGTTCTTTCAACCCGTTGATTCACTTGATTCTTGGTTTACTGATCGCCTAAGTTGTCCCCATAACAGAATTGTTGGTTCTTGNATAAACCTCGATAGGTTTTTCAAAATTTAAATATTATTTTTGCATNAGTTAAACTCTCACAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	181801	185106	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13384	E2.1.1.140	EC:2.1.1.140	Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

biological_process
GO:0008610 lipid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007253.1	PF02353.15	CMAS	101	349	7.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.784
SRR1783600	control	2.699
SRR1783602	moderate drought stress	2.200
SRR1811619	moderate drought stress	2.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.066
DRR006520	Root Summer glycyrrhizin high producing strain	1.944
DRR006521	Root Winter glycyrrhizin high producing strain	2.235
DRR006522	Root Winter glycyrrhizin high producing strain	2.527
DRR006523	Root Summer glycyrrhizin low producing strain	0.875
DRR006524	Root Summer glycyrrhizin low producing strain	0.907
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.876

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.112
SRR2868004	Drought Stress (root)	28.453
SRR2967015	Control (root)	18.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.355
SRR9715740	Leaf	80.795
SRR9715741	Leaf	66.746
SRR9715739	Root	0.783
SRR9715742	Root	6.257
SRR9715743	Root	4.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.036
SRR8749028	MeJA induced 9h	8.075
SRR8749029	MeJA induced 9h	10.035
SRR8749030	Uninduced	7.408
SRR8749031	Uninduced	16.205
SRR8749032	Uninduced	14.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.853
SRR8400027	Control - Root	20.710