Gene detail information of Glyur000107s00007248 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12020.1 | 3.00E-32 | 17.6 kDa class II heat shock protein |
| NR | ACF74271.1 | 7.24E-60 | class II small heat shock protein Le-HSP17.6 [Arachis hypogaea] |
| COG | YP_004340108.1 | 4.00E-22 | heat shock protein Hsp20 [Hippea maritima DSM 10411] |
| Swissprot | tr|P05477|HSP21_SOYBN | 1.00E-58 | 17.9 kDa class II heat shock protein |
| trEMBL | tr|B4UW51|B4UW51_ARAHY | 3.00E-60 | Class II small heat shock protein Le-HSP17.6 {ECO:0000313|EMBL:ACF74271.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00107 | 169570 | 171649 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000107s00007248.1 | PF00011.16 | HSP20 | 3 | 73 | 2.80E-18 |
| Glyur000107s00007248.1 | PF00011.16 | HSP20 | 81 | 185 | 3.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.165 |
| SRR1783600 | control | 31.084 |
| SRR1783602 | moderate drought stress | 132.310 |
| SRR1811619 | moderate drought stress | 134.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.593 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.708 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 87.364 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 93.431 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.755 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.549 |
| SRR2868004 | Drought Stress (root) | 7.230 |
| SRR2967015 | Control (root) | 5.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.571 |
| SRR9715740 | Leaf | 14.941 |
| SRR9715741 | Leaf | 10.720 |
| SRR9715739 | Root | 4.584 |
| SRR9715742 | Root | 8.703 |
| SRR9715743 | Root | 7.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.613 |
| SRR8749028 | MeJA induced 9h | 23.624 |
| SRR8749029 | MeJA induced 9h | 17.994 |
| SRR8749030 | Uninduced | 4.119 |
| SRR8749031 | Uninduced | 4.846 |
| SRR8749032 | Uninduced | 15.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.187 |
| SRR8400027 | Control - Root | 21.581 |