Gene detail

Gene detail information of Glyur000107s00007245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72820.1	2.00E-102	Mitochondrial substrate carrier family protein
NR	XP_003522286.1	0	PREDICTED: solute carrier family 25 member 44-like [Glycine max]
Swissprot	tr\|F4HT41\|SAMC2_ARATH	1.00E-19	Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor)
trEMBL	tr\|I1JU01\|I1JU01_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G05740.1}

Sequence

Transcript Sequence

>Glyur000107s00007245.1
ATGAGTTTAAGCGCAGCCGAGGATGATTCGGCTTCAGAGATTCACATCCCAGCTGAGATTGATTGGCACATGCTCGACAAGTCAAAGTTCTTCTTCCTCGGCGCCGCCTTATTCTCCGGCGTCTCCGCCGCACTCTACCCTATGGTCGTGTTGAAGACGCGCCAGCAGGTTTCTTCAGCACAATACTCTTGCCTCAACATGTCCTGTGCCATCATGCGCTACGAAGGGTTCAGAGGTTTTTACAAAGGCTTTGGTACTTCCCTCACGGGAACCATCCCTGCTCGTGCACTCTACATGGGTTCCCTCGAAGTCACAAAGAGCAACGTTGGCACTGCTTTTGTTGAATTGGGTTTCTCAGAAACTACAGCCACTGCTGTAGCCAGTGCTGCAGCTGGTGTTACCTCTGCTATGGCTGCACAATTAGTTTGGACCCCTATTGATGTTGTTAGCCAGAGACTTATGGTTCAAGGTAGTGGTGGCGGTGGAGGCAAGAGTGGTACTATTCTGGCGAATCTTAATTCTGAGAATTATAGAAATGGCCTTGATGCGTTTAGGAAGATTCTGTGTGCTGATGGACCGAGAGGGTTCTATAGGGGATTTGGGATTTCAATTTTGACCTATGCTCCTTCCAATGCGGTTTGGTGGACTTCTTATTCTATGGTTCATAGGCTCATTTGGGGTGCTTTTGGTTCCTATTTGGGTAAAAAGGAGGATAATTTGGGAAATGGGTGTGGTGGGGGTGGTTGTTTTAGGCCTGATTCGAAGGCAATGGTGGGTGTACAAGGTNTGAGTGCGGTTGTGGCTAGTGGGGTATCTGCAATTGTGACAATGCCACTTGACACGATCAAGACGAGGTTGCAGGTGTTGGATACAGAAGAGAATGGACGGAGGAGGCCGTTAAACTTTGTGCAGACGGTACGGAATTTGGTGAGTGAGGGTGGGTTGCTTGCTTGTTACAGAGGATTGGGGCCAAGGTGGGCTTCAATGTCTATGTCTGCAACATCCATGATTACTACCTATGAGTTTTTGAAACGCATGTCTACCAAGAGTCAAGATAAATTAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	160972	162039	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007245.1	PF00153.22	Mito_carr	35	109	5.60E-12
Glyur000107s00007245.1	PF00153.22	Mito_carr	124	226	2.40E-19
Glyur000107s00007245.1	PF00153.22	Mito_carr	263	349	5.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.018
SRR1783600	control	17.268
SRR1783602	moderate drought stress	21.005
SRR1811619	moderate drought stress	21.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.446
DRR006520	Root Summer glycyrrhizin high producing strain	13.245
DRR006521	Root Winter glycyrrhizin high producing strain	85.873
DRR006522	Root Winter glycyrrhizin high producing strain	83.545
DRR006523	Root Summer glycyrrhizin low producing strain	11.521
DRR006524	Root Summer glycyrrhizin low producing strain	11.117
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.996
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.402
SRR2868004	Drought Stress (root)	12.713
SRR2967015	Control (root)	15.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.584
SRR9715740	Leaf	3.554
SRR9715741	Leaf	2.494
SRR9715739	Root	14.385
SRR9715742	Root	9.780
SRR9715743	Root	14.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.114
SRR8749028	MeJA induced 9h	69.239
SRR8749029	MeJA induced 9h	30.174
SRR8749030	Uninduced	8.493
SRR8749031	Uninduced	9.261
SRR8749032	Uninduced	16.163

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.245
SRR8400027	Control - Root	16.277