Gene detail

Gene detail information of Glyur000107s00007244.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20510.1	2.00E-85	alfin-like 5
NR	KDP34051.1	1.45E-151	hypothetical protein JCGZ_07622 [Jatropha curcas]
Swissprot	tr\|Q5XEM9\|ALFL5_ARATH	1.00E-122	PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBL	tr\|A0A067KCV1\|A0A067KCV1_JATCU	5.00E-152	Uncharacterized protein {ECO:0000313\|EMBL:KDP34051.1}

Sequence

Transcript Sequence

>Glyur000107s00007244.1
GGGGGGGCAGCGAGAAGAGAAATGTATCGAAACTGGGATAGACGGACCGGATGGGCTTTTATAAATTGGGATTAACGGATTCAATTCGTTCCGATTCAAATCCGCTGAGTGCCTTGTATTGCGTTTGCGTGTTCACAGAGAGAGAGAGAGAGAGAGGGGGGGCTCAAATAACAAATAATTCGCCTATCTTTCCCTCCATTTACACACACACACACAACACTCTCACTGAAGGAACTTGAGGTCTCTCCAAAACATGGACGCTGGAGCTCCGTACAATCCCCGTACTGTGGAGGAAGTCTTCAGAGACTTCAAGGGCCGCAGAGCCGCCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCAGACAAGGAAAATCTTTGCCTATACGGATTTCCTAGTGAGCACTGGGAAGTCAATCTGCCTGCTGAGGAGGTACCTCCGGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGATTGGCTATCATTGGTCGCTGTGCACAGTGATGCATGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCAGATAGGAAGCGGCTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTCGTCACAGGGTTGGCCAAGAAGCAAGGAAAGGAAAAATCATCAGTTTCTAATCATAGCAGTACCAAATCCAAATCNAACACTAAGAGAAGTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGCAACCAAAGGATGGGGATGAGGATGGTTGGGAAGAGGAAGATGAAGAGGAGCATGGAGACACTCTGTGTGGGGCATGTGGACAGAACTATGCGTCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGCATATCAAGCAGTATAAGTGCCCATGTTGCAGCAACAAGAGAGCTCGACCTTGAAGTGACTAGGATGGTGACTACTGTATATCCTGGCAATTGTATGAGTGTATGACTGCTAATTTGTTTGGTAGGTCAGGTTTATTAGCCTTTTTCAATTCTAGATTATCTGTTTCAGATGTTACATTGGGTATCGAAGTTACATTTTATTCCGTCTCTAAGATTAGGATTTTTATGTTATAAATGAACTTATATGTTATCTTGCTTATGTGTTTCCTTAAACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	153223	156808	+

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007244.1	PF12165.3	DUF3594	10	146	5.50E-83
Glyur000107s00007244.1	PF00628.24	PHD	200	249	2.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.159
SRR1783600	control	35.127
SRR1783602	moderate drought stress	55.044
SRR1811619	moderate drought stress	56.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.200
DRR006520	Root Summer glycyrrhizin high producing strain	40.885
DRR006521	Root Winter glycyrrhizin high producing strain	21.835
DRR006522	Root Winter glycyrrhizin high producing strain	21.163
DRR006523	Root Summer glycyrrhizin low producing strain	58.425
DRR006524	Root Summer glycyrrhizin low producing strain	58.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.811
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.800
SRR2868004	Drought Stress (root)	51.803
SRR2967015	Control (root)	55.259

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.495
SRR9715740	Leaf	32.640
SRR9715741	Leaf	25.670
SRR9715739	Root	26.391
SRR9715742	Root	33.682
SRR9715743	Root	32.050

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.338
SRR8749028	MeJA induced 9h	53.900
SRR8749029	MeJA induced 9h	69.542
SRR8749030	Uninduced	28.279
SRR8749031	Uninduced	23.360
SRR8749032	Uninduced	26.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.671
SRR8400027	Control - Root	67.100