Gene detail information of Glyur000107s00007240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02060.1 | 8.00E-56 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_006578089.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g11690-like [Glycine max] |
| Swissprot | tr|O81908|PPR2_ARATH | 6.00E-61 | Pentatricopeptide repeat-containing protein At1g02060, chloroplastic (Precursor) |
| trEMBL | tr|I1JU03|I1JU03_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G05760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00107 | 149780 | 151318 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000107s00007240.1 | PF12854.2 | PPR_1 | 185 | 216 | 2.90E-14 |
| Glyur000107s00007240.1 | PF13041.1 | PPR_2 | 219 | 268 | 1.60E-18 |
| Glyur000107s00007240.1 | PF13041.1 | PPR_2 | 290 | 338 | 2.50E-11 |
| Glyur000107s00007240.1 | PF13041.1 | PPR_2 | 364 | 407 | 1.50E-09 |
| Glyur000107s00007240.1 | PF01535.15 | PPR | 436 | 465 | 0.1 |
| Glyur000107s00007240.1 | PF01535.15 | PPR | 472 | 501 | 0.00018 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.113 |
| SRR1783600 | control | 2.961 |
| SRR1783602 | moderate drought stress | 2.865 |
| SRR1811619 | moderate drought stress | 2.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.524 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.694 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.555 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.621 |
| SRR2868004 | Drought Stress (root) | 1.351 |
| SRR2967015 | Control (root) | 1.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.407 |
| SRR9715740 | Leaf | 0.987 |
| SRR9715741 | Leaf | 0.475 |
| SRR9715739 | Root | 2.006 |
| SRR9715742 | Root | 1.819 |
| SRR9715743 | Root | 1.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.140 |
| SRR8749028 | MeJA induced 9h | 4.166 |
| SRR8749029 | MeJA induced 9h | 6.242 |
| SRR8749030 | Uninduced | 1.161 |
| SRR8749031 | Uninduced | 1.681 |
| SRR8749032 | Uninduced | 3.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.130 |
| SRR8400027 | Control - Root | 1.971 |