Gene detail

Gene detail information of Glyur000107s00007235.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12040.1	2.00E-122	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
NR	XP_004501439.1	0	PREDICTED: omega-amidase NIT2-like isoform X2 [Cicer arietinum]
COG	YP_001320997.1	9.00E-75	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Alkaliphilus metalliredigens QYMF]
Swissprot	tr\|Q8RUF8\|NILP3_ARATH	2.00E-164	Omega-amidase,chloroplastic (Precursor)
trEMBL	tr\|G7J8D4\|G7J8D4_MEDTR	1.00E-173	Carbon-nitrogen family hydrolase {ECO:0000313\|EMBL:AES73441.1}

Sequence

Transcript Sequence

>Glyur000107s00007235.3
ATGGTCAAAATGGCGAAAAGAAATGAAATGCAGCAGCAACTAGAACAATCAGATCTGAAAGAACAGACTCTGCCATACCTGGCCACCAAACCCCGCTCCAAAATTCTGGCTACAGATAATCAGTTATATGTGGCAACCTGTTCACCTGCTCGGGATACTGGGTCTGGTTATGTGGCTTGGGGCCACTCCACTCTTGTTGGACCATTTGGAGAAGTTCTTGCTACTACAGAACACGAGGAGGCAATCATCATAGCAGAAATTGATTATTCAATATTGGAGGAGAGAAGGACAAATCTCCCTGTGACTAAGCAACGACGGGGTGATCTTTACCAATTGGTAGATTTCCAGAGGCTTAATTCCAACTGATTGGAGCAGGACTTCTATGATTGAGACATCTGCATAGACTGCATTACCTTGTATGAGGCATGAGCTTGCCATCTTTTGTGGTTATTGGATGCTGTATTATGGAACCCAAACCCTGAAGTGAAGAAAGAAATAAAGGAATTTGTGCTGTCTCGAATAGTTTGTTCTGTTGTTAATTGTTATCATGTGTAATTAATAATATAATATTTCTCAAATAGGGGTTGTATATTGCTTGGCCTGTGAGGGAATGAACGTGAACGTGTAAGCAGAAAGGTCAGGAGCGGAATGCTGTAAGTTAATGTGACNTGAATTGTGTCGTTTGTATGATCAGTGGATCCAGATTGGTTGCAATGTAACGTACATCAGGCTATATGGGGAATTAGTTATATGTACTGCCGCTACCAGATTCACAAATCAAAGGATTCAAGATTCTAAACCTACAATTTGCGAAGTGCATCCCTTGGAAAGAACTGGCAACCATTTTTTGAGTAAATTCACCACACTCAAATCGATGTGATGAATCGTTTCAACTAAACCATNTTTCAATTTTAACAAAACAGAATCAGACTGCAGGGTTAGTAGACTCATGCATGATGATGATGAGTTCAAGTGGTCCGAGTGGGCTTAACATCAACAGGTACTATCCGCAAGAAATTAGATAAAATAATGCTACCTCATTTCANAAGGTATTATCGGCCAAATGAAGTGGTGGCTGAAGTTGACAAAAGACTCGGCGAATTCATTACACATATGTGAGTATGGGACCATATATGAAAGAAGCTTGAATCTTCATTTACTCCTGAGGATGGGCAACGCACACAAGGCAGAAACTAACAGAGGAACGAGGGCAACATGCAATGCAAGCGCTGCACGTGACNATTAATAAGTGAGAATATATAGCGTGGGGAAGAAAAAGGCAGCTCATGAAAGTGCACGTGGGTGCAACTCACTGATACATAACTTCCCTCCGACGGAACAGAAACCTGTTGTTAATTATGCTGATCTGATCATAAGGAAAAGGGAAAGACAGGAGACCAAGAGAAAATTTGTCACTGCCAAGCTAGGCTNGGGATGAGTATTGAGTACCGACCAAGAGAGAAAATTAAGAGACAACAAAAGAAGAGAAGAGAAACAACAAGACTATGAGGGATGTGACGATGACACAGCCGCCGAGCACAGGACACGGCGACGCAATAGGGGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	138278	143952	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13566	NIT2	EC:3.5.1.3	Alanine, aspartate and glutamate metabolism	map00250
			Alanine, aspartate and glutamate metabolism	map00250
			Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process
GO:0006807 nitrogen compound metabolic process

molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.045
SRR1783600	control	22.537
SRR1783602	moderate drought stress	19.521
SRR1811619	moderate drought stress	19.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.907
DRR006520	Root Summer glycyrrhizin high producing strain	35.571
DRR006521	Root Winter glycyrrhizin high producing strain	9.158
DRR006522	Root Winter glycyrrhizin high producing strain	9.128
DRR006523	Root Summer glycyrrhizin low producing strain	34.164
DRR006524	Root Summer glycyrrhizin low producing strain	34.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.963

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.659
SRR2868004	Drought Stress (root)	20.872
SRR2967015	Control (root)	20.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.826
SRR9715740	Leaf	28.651
SRR9715741	Leaf	20.076
SRR9715739	Root	20.577
SRR9715742	Root	18.980
SRR9715743	Root	18.994

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.948
SRR8749028	MeJA induced 9h	21.893
SRR8749029	MeJA induced 9h	21.331
SRR8749030	Uninduced	11.006
SRR8749031	Uninduced	7.457
SRR8749032	Uninduced	7.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.259
SRR8400027	Control - Root	29.891