Gene detail

Gene detail information of Glyur000107s00007230

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12080.3	0	mechanosensitive channel of small conductance-like 10
NR	XP_004501436.1	0	PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum]
COG	YP_520622.1	1.00E-08	hypothetical protein DSY4389 [Desulfitobacterium hafniense Y51]
Swissprot	tr\|Q9LYG9\|MSL10_ARATH	0	Mechanosensitive ion channel protein 10
trEMBL	tr\|G7J8E6\|G7J8E6_MEDTR	0	Mechanosensitive ion channel family protein {ECO:0000313\|EMBL:AES73453.2}

Sequence

Transcript Sequence

>Glyur000107s00007230.1
ATTTCTCCTTCTGCTTTTTTCGGCTNTAAGATTTGGCAGCTTCCAATTAGGCTGCCTGCTCTGCCCTCAAGCATCGCCGTTCTTGTTGACCCACACATTCACAGACATGTTTGTGAATGGATTGTAACACTAACAAGCATCAAGGCGGTGAAGTAAGCATGGCGGAGAAGAGAAGGGAAGTGGTGGTGACGATTCCAAATGCGGGTGGAGAGAGCCAAGAGTTGAAAGGGGTTGAATCTTCGCCTAACACAACATGCCACAACAACGAGATTGCTGCAAAGTCTCCACCTTTAAACTGTGCTTCCCCTGAGATCAGGTTCATCCCCAGCCCAAATAAGCCCCCAAAAGNCCCCAACCTCACCACAAGGAAATCACTTGCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACTTTACCCCTTTGATGGGACCATTTTAGTAGCGAAAGAGAAAGAGAATGGCACTTCTTCTTCAACTTTGCAAGAACAAATGGCTGGTAGTACTTCACCATATAGGAACTCCTTCANTAAAGTATCACCTAATAATGTTACCAGAACAGTCTCCATCACTTCTGTCATCACTCCCAAGACACCCTTGATGGCTTCTCCTGGTCCTGCTGGGGAGGATCCTGATGAAATCATTTACAGGAAAGTTGAATCTAGTAAAGGCAAGCGTAGGAGACTCACAACTAAGGTTTTGGTAGAATGTTTTGTGTTTGTGTGCATTGCGGGTAGCCTTCTGGCTAGCTTGACTGTTGAGCAACTGAAAAGGACACAGATCTGGGGTTTGAGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACCAAATGGTTCATGCTCATTGTTGTCTTCTTGATTGAGATGAACTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTACATGCACTGAAGAAGTGTGTCCGGGTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGCATATCAATCATGGGGTCCAGCGATCTGAATTGGCCACAAAGATTTTGGACGGTGTGACGTGGACCCTTGTTTCCCTTCTCATTGGAGCAGCCCTGTGGGTCATAAAGACCTTGTTGCTAAAGATTCTGGCATCAAAATTCCATGTCAAGTCCTTCTTTGATCGGATTCAAGAATCGATCTTCCATCAGTATGTTCTATGGACTCTCTCCGGGCCGCCACTTATGGAAGAGGCTGAGAAGGTTGGGGGGTCGCAGAGTATTGGTCATTTTAGTTTCAGGAGTACAACCAGTAAAGGGGGCACAAAAAAGGAGGTTATTGATATGGGAAAGCTTCACAGGATGAAGCAGGAGAAAGTTTCTGCGTGGACTATGAAGATTTTGGTAGACGCAGTGACAAATTCAAGGCTGTCCACAATCTCCANTTCACTAGATGAGAGTTTTTATGATGCAGAAAATGACCAAACTGATAAAGAAATTACCAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTTCCCCTGATTGCCAGTACATTGACGAGGATGAACTCCGTAGGTTCATGATTAAGGAAGAAGTACGTCTAGTCTTTCCCCTACTGGCTGAACCAGAGACAGGACAAATTACCAGAAAATCTTTAACAGACTGGGTGTTGAAGGTGTATCAAGAACGCAAAGCATTGGCGCATGCTTTAAGCGACACCAAAACAGCTGTAAAACAATTAAACAAGCTTGTGACAGGGGTCCTAGTAGTGGTGACCATAGTAATATGGCTTTTGCTAATGGAGATTGCAACGACAAAAGTACTTGTGTTCCTCTCATCGCAGCTAGTACTTGCAGCTTTNATGTTTGGAAACACGTGCAAAAATATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGCGATCTATGTGTTATAGATGGCATTGAGTTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAAGTGTACTATCCAAACTCTATCCTGGCCACAAAACCGATTAGCAATTTTTACAGAAGCCCAAATATGGTTGACAATGTAGAGTTCTCCATTGATTTTATGACACCAGCAGAGAAAATTGGGGCAATGAAAGAAAAAATAAAGAGGCACTTGGAGAGAAATCCACAATACTGGCATCCCAATCTCGGCTTAGTAGTGAAGGAGATTGAAAATGTAAACAAGATTAANATGGGTCTCTTTGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAAAAGACCAAGCGGAGAAGTGAGCTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTCCCGCAAGCTGTTCANCTCAGACATATGGAACCGGGTCATACCAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	109000	112816	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007230.1	PF00924.13	MS_channel	542	747	4.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.784
SRR1783600	control	27.243
SRR1783602	moderate drought stress	29.262
SRR1811619	moderate drought stress	28.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.829
DRR006520	Root Summer glycyrrhizin high producing strain	13.012
DRR006521	Root Winter glycyrrhizin high producing strain	19.817
DRR006522	Root Winter glycyrrhizin high producing strain	18.722
DRR006523	Root Summer glycyrrhizin low producing strain	18.806
DRR006524	Root Summer glycyrrhizin low producing strain	19.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.789

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.055
SRR2868004	Drought Stress (root)	43.283
SRR2967015	Control (root)	69.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.618
SRR9715740	Leaf	13.840
SRR9715741	Leaf	12.982
SRR9715739	Root	7.517
SRR9715742	Root	20.818
SRR9715743	Root	17.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.519
SRR8749028	MeJA induced 9h	45.667
SRR8749029	MeJA induced 9h	21.828
SRR8749030	Uninduced	37.000
SRR8749031	Uninduced	63.059
SRR8749032	Uninduced	40.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.401
SRR8400027	Control - Root	26.997