Gene detail information of Glyur000107s00007229 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06520.1 | 1.00E-20 | photosystem II subunit X |
| NR | XP_004501435.1 | 5.39E-53 | PREDICTED: uncharacterized protein LOC101502251 [Cicer arietinum] |
| trEMBL | tr|G7J8E2|G7J8E2_MEDTR | 4.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:AFK46255.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00107 | 105860 | 106231 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000107s00007229.1 | PF06596.6 | PsbX | 87 | 122 | 5.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.412 |
| SRR1783600 | control | 0.300 |
| SRR1783602 | moderate drought stress | 0.182 |
| SRR1811619 | moderate drought stress | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.566 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.420 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.210 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3110.770 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2952.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.306 |
| SRR2868004 | Drought Stress (root) | 30.162 |
| SRR2967015 | Control (root) | 11.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1259.094 |
| SRR9715740 | Leaf | 1193.685 |
| SRR9715741 | Leaf | 942.498 |
| SRR9715739 | Root | 0.989 |
| SRR9715742 | Root | 6.423 |
| SRR9715743 | Root | 6.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.324 |
| SRR8749028 | MeJA induced 9h | 16.912 |
| SRR8749029 | MeJA induced 9h | 13.344 |
| SRR8749030 | Uninduced | 24.735 |
| SRR8749031 | Uninduced | 3.795 |
| SRR8749032 | Uninduced | 21.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.474 |
| SRR8400027 | Control - Root | 33.168 |