Gene detail

Gene detail information of Glyur000107s00007220

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G21920.1	6.00E-60	YGGT family protein
NR	XP_004501430.1	4.96E-122	PREDICTED: uncharacterized protein LOC101500659 [Cicer arietinum]
COG	YP_001655744.1	9.00E-18	hypothetical protein MAE_07300 [Microcystis aeruginosa NIES-843]
Swissprot	tr\|O78424\|YCF19_GUITH	1.00E-08	Uncharacterized protein ycf19
trEMBL	tr\|B7FJ31\|B7FJ31_MEDTR	3.00E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ84760.1}

Sequence

Transcript Sequence

>Glyur000107s00007220.1
CAAGGGGTTATCTTGTTCCAGAAAGAGTATCTTTTCCCAAGACCCCATGCGTTAGCGTTATCCTCTTTGGGCTCCATAGAATTCATTCAGATAGATGCAGTGTTGAGCTTCTTCTTCCNCTCAAGCGAACTAGATTGAATGGCGGTGAATGCGTCCACCGAGACTGAAACCAAGAAGGTGTCGTTTTGCTGGGGAAACGCTCAAACACCATTTGCACTCCCATTTCTCAGACTCCCCATCTCCAACTTCGTTCCCCCACCCGAACTCCACACATCCATCTCCACCGCTGCTNATCACTGTTTCAAATTTCTGCACTCCCTCGCTTCTCAAAACCCCATCATAAAGAAAGTACTCTCTCTTAACACTGAATTCCACAACCTATGCTCCCAGATTCGGTGCAGTAACTACAGGAACGCGAGGTTGCTGAGTAATCACAATTTTGCTGCTGTTTTACCTGGGGACTCGGTGGCAGGGCTAGTGGCGGCTAATGGAGTCCTCAATTTCTTGAACCTTTACAACACCTTGCTCGTTGTTAGGCTTGTCTTGACCTGGTTTCCCAACACTCCTCCTGCTATCGTTAGTCCCCTCAGCACCATATGTGACCCATATCTGAACATATTCCGTGGACTCATCCCCCCTCTTGGAGGAACACTGGATCTCTCTCCCATCCTAGCGTTCCTGGTCCTGAATGCCTTCACTAGCGCTGCTACTGCACTCCCTGCTGAGCTTCCAGTCACTGAACAATCCAAACAAGGTCTTGCAGCAAGAGTACAGTCTACTGCTGTTACTTCTTCACAGAACAAATGGATGAGACGGCTTCAAGGGAACAGGTCAAAGACCTCCACTCGTGCTGATTAGAATATAATTGTGTTTTTTGTTTGTACCTTTTGCTGTTTATTAATCTGGAGATAGGGTTCTGTTGTTCCTTCCCAGTTATGATGATAGTTCTAGGCAACACAATTTTTCTGAGCTTGTGATTCTTGAGATTTAAGTGTTNTGAGCTTTGCTGTGCCACTGTGGAAAGCTCCAGCTTCCACAGTCACAGTTTAATCTGTATTATTTTATTTTTTGAATTTTTTATTACAAAACATAAATCCCATTGTTTACTTTTAATCTTAAGGTCCATAAGCAGGAGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	68568	70398	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007220.1	PF02325.12	YGGT	122	189	5.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.870
SRR1783600	control	13.912
SRR1783602	moderate drought stress	16.096
SRR1811619	moderate drought stress	16.115

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.175
DRR006520	Root Summer glycyrrhizin high producing strain	10.478
DRR006521	Root Winter glycyrrhizin high producing strain	7.831
DRR006522	Root Winter glycyrrhizin high producing strain	7.535
DRR006523	Root Summer glycyrrhizin low producing strain	13.732
DRR006524	Root Summer glycyrrhizin low producing strain	13.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	145.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	145.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.377
SRR2868004	Drought Stress (root)	12.140
SRR2967015	Control (root)	14.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	115.959
SRR9715740	Leaf	143.228
SRR9715741	Leaf	82.145
SRR9715739	Root	9.799
SRR9715742	Root	14.107
SRR9715743	Root	10.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.511
SRR8749028	MeJA induced 9h	8.872
SRR8749029	MeJA induced 9h	8.113
SRR8749030	Uninduced	7.955
SRR8749031	Uninduced	3.441
SRR8749032	Uninduced	7.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.916
SRR8400027	Control - Root	12.393