Gene detail

Gene detail information of Glyur000107s00007219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G21930.2	2.00E-52	P-type ATPase of Arabidopsis 2
NR	XP_004501429.1	4.79E-70	PREDICTED: copper-transporting ATPase PAA2, chloroplastic-like [Cicer arietinum]
COG	YP_007110268.1	6.00E-33	heavy metal translocating P-type ATPase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|B9DFX7\|HMA8_ARATH	3.00E-60	Copper-transporting ATPase PAA2, chloroplastic (Precursor)
trEMBL	tr\|K7KIA3\|K7KIA3_SOYBN	1.00E-72	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G05904.1}

Sequence

Transcript Sequence

>Glyur000107s00007219.1
CGGAATTCAACGAACGCCTGTAGCTTATGGAAAATATATGTAACGCGAAGATTTTCGTGGTTCACGTTTACCATCCCTTCTCTTCTCCCCGTCCCCGATGATGGCGACTAATCTGCTCAGGCCTTCACTCTCCTTGCAACCTAAGCTCTGTTCCAATTACACNCTCAATCATGGCGTCCACTTCATTTCTACGCTTCAGACCAAACGACGTCGCAACCTCAACCGCAACTGCCGGAAAATTCTCCGGCCACATNATTTCTTCGTATCAAACTCCCTTGCGGCTGATATTGGCTCGCCGGAATCANCTCTTCTTCAAGGCCAAGCACAGAGCAAAGACTCGCCGGTCCTGCTCGACGTCACCGGCATGATGTGCNGCGCGTGCGTCTCCCGAGTCAAAAACATCCTGTCCGCCGATGACCGAGTCGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAATTGAGGCGGCTCGAGGAGGAACCGGAGAGCGTGGCGGAGAGCCTTGCCCGGAGACTGAGCGATTGCGGTTTTCCGACGAAGAGGAGAGCGTCGGGTTTGGGAGTGGCGGAGAATGCGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAAATGGTCGCCAAGAGCCGAAACCGCGTAGCTTTCGCTTGGACTTTGGTGGCACTGTGCTGTGGATCGCACGCTTCGCATATTTTTCATTCTTTGGGGATTCACATTGCTCATGCCGGACCGTTTTGGGAAATTCTTCATAATTCATATGTCAAAGGTGGTTTGGCTTTGAGCTCTCTATTGGGACCGGGACGAGAGTTACTCTTTGATGGCCTAAATGCATTTAAGAAAGGGTCGCCAAATATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCCGGGTTGGCATGGGATGCGTCATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTAGGACGTTCTCTGGAGGAAAAAGCAAGGATTCAGGCATCGAGTGATATGAATGAACTTCTTTCACTAATATCTACTCAGTCAAGACTTGTCATTACTTCATCCGAAGGTTCCCCATCTACTGACAGTGTGCTTTGCTCTGACACAATTTGTGTTGAAGTCCCAACTGATGATGTTCGAGTAGGTGACTCAGTGTTGGTCTTGCCTGGAGAAACTATTCCAATAGATGGAAGGGTCATTGCTGGAAGAAGCGTTGTGGACGAATCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCCCAGTTTCAGCAGGAACTATGAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAATACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCCATAGCAGGGCCATTTGTGTACAGTGTAATGACTCTGTCAGCAGCAACATTTTCATTTTGGTATTTTATTGGATCAAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTCGCTGTGGATGTTTTGGTTGTTTCTTGTCCTTGTGCACTAGGTCTTGCCACACCGACAGCAATCCTTGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGGGATGTGCTGGAACGCTTGGCCAGTGTAAATTATATTGCTCTAGACAAGACAGGAACCCTCACTAGTGGAAAACCAGTTGTCTCTGCCATAGGCTCTATTCATTATGGGGAGTCAGAAATTCTTCAGATCGCTGCTGCAGTGGAGAAAACTGCTTCTCATCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTCCTTCCAGTCACAAAAGGACAGTTAGTTGAACCTGGTTTTGGAACCATGGCAGAAATAAATGGGCGTTTGGTTGCAGTTGGGTCTTTAGAATGGGTCCAGGAACGTTTCCAGACTAGAATGAACNCATCTGATTTGATGAATCTGGAACATGCTTTGATGAATCATTCATCAAATACAACATCTTCGAATTATTCCAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCGTTGGTGCCATTGCCATATCTGACATTGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGCAGAAGGGGATTAAAATGGTCCTTTTATCAGGAGACAGGGAAGAGGCAGTTGCACCAATAGCAGAGACAGTTTGAATTGAAAATGACTTGTCAAAGCATCTTTGTCTCCGCAGCAGAAATCTGGATTTATTTCATCTCTGAAAGCTGCTGGATATCATGTTGCGATGGTGATGGGATAAATGATGCACCCTCTTTGGCTGCAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCCGCCTCGGATGCAGCATCCATTATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCACTAGACCTGGCACAGACAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCAGTAGCTTACAATGTTGTTGCTGTTCCCATTGCTGCTGGTGTGTTACTTCCCCAATTTGACTTTGCTATGACACCTTCACTTTCAGGAGGACTAATGGCTCTGAGCTCCATCTTCGTGGTTAGCAACTCACTGCTTCTAAAGTTTCATGGGTCTCAGACATCCAGAAAGGGCTTACTCTAGTGACACATAAACATATCTTCCATCCATTCAAACTTGGATATGTATAATGTAAAATATGCGTCGGGACCCTTATCATGAGTCATGACAGTTGGAGTACGAATTTCAAGTGTCTATCTCGTGAGGTATAGTGATATACGGCTATGGATGAAAATTTCACGTCTCATAATGTCATAATTTTGTGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	55984	64701	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007219.2	PF00403.21	HMA	85	148	2.00E-06
Glyur000107s00007219.2	PF00122.15	E1-E2_ATPase	292	535	2.70E-47
Glyur000107s00007219.2	PF00702.21	Hydrolase	541	722	1.00E-22
Glyur000107s00007219.3	PF00403.21	HMA	85	148	2.00E-06
Glyur000107s00007219.3	PF00122.15	E1-E2_ATPase	292	535	2.70E-47
Glyur000107s00007219.3	PF00702.21	Hydrolase	541	722	1.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.504
SRR1783600	control	23.120
SRR1783602	moderate drought stress	16.513
SRR1811619	moderate drought stress	16.254

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.472
DRR006520	Root Summer glycyrrhizin high producing strain	18.628
DRR006521	Root Winter glycyrrhizin high producing strain	2.577
DRR006522	Root Winter glycyrrhizin high producing strain	2.402
DRR006523	Root Summer glycyrrhizin low producing strain	13.278
DRR006524	Root Summer glycyrrhizin low producing strain	12.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.497

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.987
SRR2868004	Drought Stress (root)	40.569
SRR2967015	Control (root)	39.915

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.955
SRR9715740	Leaf	62.217
SRR9715741	Leaf	66.621
SRR9715739	Root	24.140
SRR9715742	Root	44.096
SRR9715743	Root	38.259

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.451
SRR8749028	MeJA induced 9h	9.239
SRR8749029	MeJA induced 9h	5.412
SRR8749030	Uninduced	12.804
SRR8749031	Uninduced	15.487
SRR8749032	Uninduced	12.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.345
SRR8400027	Control - Root	26.782