Gene detail

Gene detail information of Glyur000107s00007215.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G43860.1	2.00E-164	glycosyl hydrolase 9A4
NR	XP_004501427.1	0	PREDICTED: endoglucanase 16-like [Cicer arietinum]
COG	YP_002464713.1	4.00E-78	glycoside hydrolase family protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q8VYG3\|GUN16_ARATH	0	Endoglucanase 16 (Precursor)
trEMBL	tr\|G7J933\|G7J933_MEDTR	0	Glycosyl hydrolase family 9 protein {ECO:0000313\|EMBL:AES73474.2}

Sequence

Transcript Sequence

>Glyur000107s00007215.1
ATGGGTACTCAAAGAGTATATCGGGCCATCATTGTAGTATGGCTTACTAATTTATTATTTGAAGGAAATGTGATGCTTGTTAAGGGTGATCTTAATTATAAGGAGGCTCTCACAAAGTCCCTTATCTTCCTAGAGGCACAAAGATCAGGGAAGCTACCTTCCAATAACAGGGTGCCTTGGAGAGGAGACTCTGCACTCGATGATGGAAAACTCGANAATGTGGATCTTGTTGGGGGATACTATGATGCAGGGGATAATGTGAAATACGGGCTACCCATGGCTTTCACTGTTACTACTCTATCATGGGCTGCTCTTTTTTACAAGTCAGATTTTGAACATGCCAAGGAGTTGGATAATATTCACGCAGCCATTCGATGGGGTACGGATTATTTTCTGAAAGCTACTTCTCGAAGGAAAAGATTATATGTGCAGGTAGGAGACCCAGAAGAGGATCACCATTGTTGGGTTCCCCCAGAAAATATGAAGACAAAAAGAACGGTCTTGAAGATTGATGGCGACACGCCCGGGACTGAGATTGCAGCTGAAACTTCCGCGGCAATGGCTGCTTCTTCCATGCTTTTCCAAATGGCAAAATCGCATAAAGGAACCTATGATGGAGAGTGCCCCTTCTACTGCTCCTATTCGGGCTATCATGACGAATTGATGTGGGCAGCAACATGGCTATACATGGCTACAAGGAAGCCTATGTATATGAAGTACATACAAGAAGAAACCATTAGTGCTTGTGTAGCAGAATTCAGTTGGGACCTTAAATATGCTGGATCTCAAATCCTTCTCTCTCAGTTCCATTTTGAAGGTCAAAAGGGTCTGGATACATTCAAATCCCACGCTGATAGTTTCATATGTTCTGTTCTTCCTGATAGTCCTTACCACCAGATTAATTTGTCTCCTGGTGGCTTTATTCATTTGAGAGATGGAGCCAACACACAGTATGCCACTGGCACATCTTTCTTGTTGACTGTGTATGGTGATATGCTTGCCAACCATAAACAGAAAATCACCTGTGGAGAGAAACAAATTAGCTCATCCCATNTCCTCAATTTTGCTAAGAAACAAATGGATTACATACTAGGGAAAAACCCTCAAGGGAGATCGTACATGGTAGGATTTGGGAAGAACCCACCAACGCAAGCTCACCACAGAGGCGCATCGGTGCCAAAGTTGCCAAAGAATGAAATAGAATCGGTGAAGTGTCCCATGACCTTCGCGAAATGGCTTCAGAAAGATGGACCCAACCCGAATGAGCTCACCGGGGCCATTGTGGGTGGACCTGACATCGGCGACAATTTCCACGACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00107	24776	27402	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01179	E3.2.1.4	EC:3.2.1.4	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000107s00007215.1	PF00759.14	Glyco_hydro_9	32	440	1.60E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.308
SRR1783600	control	0.302
SRR1783602	moderate drought stress	0.453
SRR1811619	moderate drought stress	0.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.163
DRR006520	Root Summer glycyrrhizin high producing strain	0.143
DRR006521	Root Winter glycyrrhizin high producing strain	0.334
DRR006522	Root Winter glycyrrhizin high producing strain	0.328
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.376

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.953
SRR2868004	Drought Stress (root)	0.832
SRR2967015	Control (root)	1.371

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.765
SRR9715740	Leaf	0.393
SRR9715741	Leaf	0.899
SRR9715739	Root	0.007
SRR9715742	Root	0.248
SRR9715743	Root	0.162

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.549
SRR8749028	MeJA induced 9h	0.229
SRR8749029	MeJA induced 9h	0.183
SRR8749030	Uninduced	0.087
SRR8749031	Uninduced	0.119
SRR8749032	Uninduced	0.276

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.135
SRR8400027	Control - Root	0.914