Gene detail information of Glyur000107s00007209 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20650.1 | 2.00E-36 | copper transporter 5 |
| NR | XP_004501422.1 | 3.65E-84 | PREDICTED: copper transporter 5.1-like [Cicer arietinum] |
| Swissprot | tr|Q93VM8|COPT5_ARATH | 3.00E-48 | Copper transporter 5 |
| trEMBL | tr|I3S402|I3S402_LOTJA | 7.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:AFK34994.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00107 | 2151 | 2582 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000107s00007209.1 | PF04145.10 | Ctr | 2 | 126 | 3.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.353 |
| SRR1783600 | control | 21.788 |
| SRR1783602 | moderate drought stress | 19.921 |
| SRR1811619 | moderate drought stress | 21.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.914 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.069 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.234 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.390 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.246 |
| SRR2868004 | Drought Stress (root) | 77.690 |
| SRR2967015 | Control (root) | 64.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.190 |
| SRR9715740 | Leaf | 9.082 |
| SRR9715741 | Leaf | 8.429 |
| SRR9715739 | Root | 17.409 |
| SRR9715742 | Root | 10.358 |
| SRR9715743 | Root | 12.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.100 |
| SRR8749028 | MeJA induced 9h | 12.114 |
| SRR8749029 | MeJA induced 9h | 14.527 |
| SRR8749030 | Uninduced | 36.058 |
| SRR8749031 | Uninduced | 22.827 |
| SRR8749032 | Uninduced | 28.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.617 |
| SRR8400027 | Control - Root | 13.797 |