Gene detail

Gene detail information of Glyur000106s00011745.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28880.1	0	para-aminobenzoate (PABA) synthase family protein
NR	XP_004496287.1	0	PREDICTED: para-aminobenzoate synthase-like [Cicer arietinum]
COG	YP_001106232.1	3.00E-176	para-aminobenzoic acid synthase [Saccharopolyspora erythraea NRRL 2338]
Swissprot	tr\|Q6TAS3\|ADCS_SOLLC	0	Aminodeoxychorismate synthase, chloroplastic (Precursor)
trEMBL	tr\|K7LKM5\|K7LKM5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G35580.2}

Sequence

Transcript Sequence

>Glyur000106s00011745.1
ATGATTTGCTCTATCGTGTATTTTATGTTTGGACACTTTTTTCCTGCAAAACAAATGAACTTCTCTTTGCGTTTGTTGTCTTCTGAGCTCACCTGTCCCACAAGTGAAGCCATGCAGTGCACAAATGTGAACATTCTATTGTCCAGATCCCCAATAAGGGTTCCCTGTTTCGTTAATAAAGATGACATGCGAGTATATAACCGTGGTGGAAGGAACGTGAGGGTGTCTTGCCAATTGATGCATGGCCACTTAGAAGAGTCATATAAAAGAAAGAAAAGGCTGCAGATGCCTGTACNGAAGCCAGATTTCGTGAGGACATTGTTGATTGACAATTATGACAGTTACACATACAATATATACCAGGAGCTATCTGTTATCAATGGTGTCCCTCCCGTGGTGATTCAAAATGATGATTGGACGTGGGAAGAACTTTGCCATTACTTGTATGAAGAAAATGCATTTGATAACATTGTAATATCACCTGGACCTGGTTCTCCGGCATGCCCTGAAGATATAGGCATTTGTCTTCAGCTATTGCTTAATTGCTGGGATATTCCTGTTCTGGGTGTTTGCCTAGGACACCAGGCATTGGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGACGTCTGAGTGAAGTTGAGCACAATGGATGCCAGCTTTTTCATGGCATACCTTCTGGTAGAAATTCTGGTTTCAAGGTGGTTCGATATCATTCACTGGTGATAGATTCTGAATCACTTCCTGAAGAGCTCATTCCAATAGCATGGACTTCTTCCAATAGCACANTTCCATTTATTGGGTCCAAGGATTCTGACAAGTACAATACTCGTGAAACTCAGACTGGTCAAAGCATCTTTGCTGATCCTTTTTTACCTAAAATAGGAAATGGAAGTTCAAACCATTTTGGTTATGAAAAAACTCAAAATGCAAGGGTTCTTATGGGAATTAAGCATTCTACAAGGCCACACTATGGTGTGCAGAGAGTGTTGCAACCTGCCATGGAAGTCAAATATTCAAGAATTTTAGAGAGATTACAGATGATTATTGGCTCAGATATAGGTCATCATACAGCAAGGGAAAATGTGCTAATTCTGATGGTTTCAAGTGCTAGTAGACTCTACAGAGAATTTCGCAGAAGTTTNAGTTCGGAGAATAATGCAGTGGATCAGCTAAAAAGAGTAGATCATGGAGATAAACATTTGGTATATAATAATGCTGAGATGAAGTGTTTACAAATGTTTAACATGAAATTTGATCACTTGGCCAATCAAGTTGGTGGAGCAAAAAATATATTCTGTCAGCTGTTTGGACATGAAGCTGAAAACACCTTTTGGTTGGATAGTTCCTCTACAGAGAAGGGAAGAGCACGCTTTTCATTCATGGGGGGAAAAGGTGGATCACTTTGGAAGCAGTTAACATTCAGATTGTCCNATCAAAGTGATGGGTGTTCAGAAGGTGGTGGCTATTTGTCACTGGAAGATTCTCATGGTTCTGCCAGAACAATATTCTTGGAAGGAGGTTTTCTTGAATTTTTGAACAAGGAGCTTCAATCGTATCGTTATGATAAAGATGAATATGAAGATCTACCATTTGATTTTCATGGTGGATATGTTGGTTACATCGGGTATGACCTCAAAGTTGAATGTGGTGTCACATCTAACCGTCACAAATCTAAAAGTCCAGATGCATGTTTTTTCTTTGCCGATAATCTTGTAGCTATTGACCACAAAAATGGTGATGTTTATTTATTGGCTATACATGAAGAAAGTTCAAGTATAACACAGTGGTTGGATGATACTGAGGAGAAGCTTCTGAGCATAAATGGCTCAGTGAGGATGAATTTAGAAAGACAGTATTCTCNTCCTTTAACTTTTTCCTCACGTAAGGCTGGTTTTGCAGCTGAAAAATCTAGAGAGCTATACATTGAAGATGTTAAGAAGTGTCTAAACTACATTAAAGATGGAGAGAGCTATGAGTTGTGTTTCACAACCCAGATAAGGAAACCAATTGAGGGATTAAATTCTCTTGGATTTTATCTGCATTTGAGAGAAAGGAATCCAGCACCTTATGCTGCTTGGCTTAATTTTTCAAAGGAAGATCTCTGTATTTGCTGTTCTTCCCCNGAGAGGTTCCTGCGGTTGGATAGGAATGATATTCTAGAAGCTAAGCCCATTAAGGGTACTATAGCTCGTGGTGCTACTGAAGAGGAAGATGAGCAACTCAAATCGAAATTACAGCTCAGTGAAAAGGATCAGGCTGAAAACCTGATGATTGTTGACCTTCTAAGGAACGACCTTGGTCGTGTATGTGATCCTGGATCTGTTCATGTGCCACATCTCATGGATGTAGAATCATATGCAACTGTTCACACAATGGTGAGTACAATTCGTGGGAAGAAACATTCAGATGTCAGTGCTGTAGACTGTGTCAAAGCTGCATTTCCTGGTGGTTCGATGACAGGNGCACCAAAGTTGAGATCAATGGAACTTCTTGATTCTCTTGAAAGTTGTTCTCGAGGTATCTACTCGGGCTGTATTGGATTTTTCTCATATAATCAGACATTTGATCTAAATATTGTCATAAGAACAGTCGTTATACATGAGGGTGAAGCTTCAATAGGAGCTGGAGGGGCAATTGTTGCTCTGTCAAACCCTGAAGACGAGTATGAAGAGATGATCTTAAAAACAAAAGCCCCAGCAAAGGCTGTGATAGATTTTGAATAGAGTTCGATAAACCAAGAAATGTCTTTTTCCTCTTTAGCCCAAGGTCAGACACCATTGCTCCAATGTGTTTCGTCCTACTAATCATTTTATTATTTTCAAAGTAGNCTTACAAGTTACAAGGGTTCGACTGTTTCATGGACCCATTATGGCAAGGAGCTTTATGGCACCAGCTGCTTTTTACAGAAGGAATAGAAAAGAATATTATGGTATAGCTGGGTTCAATTGTTTTGAGGTTGGAAGGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00106	316286	325997	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13950	pabAB	EC:2.6.1.85	Folate biosynthesis	map00790

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009396 folic acid-containing compound biosynthetic process

molecular_function
GO:0016833 oxo-acid-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000106s00011745.1	PF00117.23	GATase	107	268	1.20E-28
Glyur000106s00011745.1	PF04715.8	Anth_synt_I_N	437	589	2.60E-21
Glyur000106s00011745.1	PF00425.13	Chorismate_bind	644	901	1.90E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.716
SRR1783600	control	2.684
SRR1783602	moderate drought stress	2.338
SRR1811619	moderate drought stress	2.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.182
DRR006520	Root Summer glycyrrhizin high producing strain	3.249
DRR006521	Root Winter glycyrrhizin high producing strain	8.318
DRR006522	Root Winter glycyrrhizin high producing strain	8.055
DRR006523	Root Summer glycyrrhizin low producing strain	3.113
DRR006524	Root Summer glycyrrhizin low producing strain	3.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.571

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.216
SRR2868004	Drought Stress (root)	14.565
SRR2967015	Control (root)	14.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.874
SRR9715740	Leaf	14.374
SRR9715741	Leaf	16.279
SRR9715739	Root	1.283
SRR9715742	Root	5.897
SRR9715743	Root	4.668

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.086
SRR8749028	MeJA induced 9h	8.149
SRR8749029	MeJA induced 9h	3.742
SRR8749030	Uninduced	15.837
SRR8749031	Uninduced	12.786
SRR8749032	Uninduced	8.490

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.977
SRR8400027	Control - Root	13.062