Gene detail information of Glyur000106s00011744.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48850.1 | 0 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative |
| NR | XP_004496285.1 | 0 | PREDICTED: chorismate synthase, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | YP_003890271.1 | 4.00E-176 | chorismate synthase [Cyanothece sp. PCC 7822] |
| Swissprot | tr|P57720|AROC_ARATH | 0 | Chorismate synthase, chloroplastic (Precursor) |
| trEMBL | tr|G7I3B2|G7I3B2_MEDTR | 0 | Chorismate synthase {ECO:0000256|RuleBase:RU000605} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 306849 | 314559 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01736 | aroC | EC:4.2.3.5 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011744.1 | PF01264.16 | Chorismate_synt | 58 | 405 | 4.50E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 65.716 |
| SRR1783600 | control | 65.742 |
| SRR1783602 | moderate drought stress | 53.291 |
| SRR1811619 | moderate drought stress | 53.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.611 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.473 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.213 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.555 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.665 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 146.676 |
| SRR2868004 | Drought Stress (root) | 156.172 |
| SRR2967015 | Control (root) | 139.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 91.994 |
| SRR9715740 | Leaf | 74.821 |
| SRR9715741 | Leaf | 102.794 |
| SRR9715739 | Root | 50.746 |
| SRR9715742 | Root | 80.562 |
| SRR9715743 | Root | 79.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 75.213 |
| SRR8749028 | MeJA induced 9h | 86.327 |
| SRR8749029 | MeJA induced 9h | 62.495 |
| SRR8749030 | Uninduced | 170.594 |
| SRR8749031 | Uninduced | 145.348 |
| SRR8749032 | Uninduced | 83.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 129.421 |
| SRR8400027 | Control - Root | 119.296 |