Gene detail information of Glyur000106s00011742 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39220.1 | 1.00E-174 | PATATIN-like protein 6 |
| NR | KEH43521.1 | 0 | patatin-like phospholipase [Medicago truncatula] |
| COG | YP_006866470.1 | 1.00E-35 | patatin-like phospholipase [Psychroflexus torquis ATCC 700755] |
| Swissprot | tr|O80959|PLP6_ARATH | 0 | Patatin-like protein 6 |
| trEMBL | tr|A0A072VPD8|A0A072VPD8_MEDTR | 0 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 289897 | 295019 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011742.1 | PF01734.17 | Patatin | 82 | 300 | 1.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.001 |
| SRR1783600 | control | 19.077 |
| SRR1783602 | moderate drought stress | 25.206 |
| SRR1811619 | moderate drought stress | 24.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.785 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.936 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.871 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.856 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.658 |
| SRR2868004 | Drought Stress (root) | 73.768 |
| SRR2967015 | Control (root) | 66.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.667 |
| SRR9715740 | Leaf | 25.174 |
| SRR9715741 | Leaf | 33.667 |
| SRR9715739 | Root | 6.424 |
| SRR9715742 | Root | 28.242 |
| SRR9715743 | Root | 23.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.776 |
| SRR8749028 | MeJA induced 9h | 14.349 |
| SRR8749029 | MeJA induced 9h | 10.783 |
| SRR8749030 | Uninduced | 29.723 |
| SRR8749031 | Uninduced | 14.216 |
| SRR8749032 | Uninduced | 12.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.292 |
| SRR8400027 | Control - Root | 42.459 |