Gene detail

Gene detail information of Glyur000106s00011735

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37170.1	2.00E-136	plasma membrane intrinsic protein 2
NR	AFK47400.1	0	unknown [Lotus japonicus]
COG	YP_007100376.1	7.00E-29	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P43287\|PIP22_ARATH	0	Aquaporin PIP2-2, N-terminally processed
trEMBL	tr\|I3T4F8\|I3T4F8_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47400.1}

Sequence

Transcript Sequence

>Glyur000106s00011735.1
ATGGCAAAGGACGTTGAGGTTGCTGAGCGTGGCTCCTTCTCTAGCAAGGACTACCATGACCCTCCTCCTGCACCCCTCATTGATGCTGAGGAGCTCACAAAGTGGTCCTTTTACAGGGCCCTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTCTACGTTACTGTGCTCACCGTGATTGGGTACAAGTTGCAGAGTGATACTAAAGCTGGTGGTGATGAATGTGGAGGGGTTGGTATTCTTGGGATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCTGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCTCTGATCCGAGCCATCATGTACATGGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGGTTGGTCAAGGCCTTCCAAAAGTCTTACTACAACAGATATGGTGGTGGGGCTAACTCTCTCAATGATGGCTATAGCACAGGCGTTGGATTGGGTGCTGAGATCATTGGTACCTTTGTTTTGGTGTACACTGTCTTCTCTGCTACTGATCCCAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAATCACCGGCACCGGCATTAACCCTGCTAGGAGTTTTGGAGCTGCTGTTATCTTCAACCAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTTGCTGGGGCAGCCATTGCAGCCTTCTACCACCAGTTCATCTTAAGGGCAGGTGCAGCTAAGGCTCTTGGGTCATTCAGGAGTAACCCCACTGTTTGAGGTTATATTATCTTCTTCCACTTCATGATAATATATGATGATGGCTTTTAATGGGAAAGAAGGGTTAATTGAAGAGATGGGATTTGATAGCTGCAAGTATAATAATGGGGAAGTGCTTTCTGTGGCTTGCTTTGTATTTGCAAGGTTTCTTTTGACCCTCTCAATTGCTTCCAGATTGTGGATAAGTGTAGATCAAATTAAAGTCTCTTTCGTGACAGGGGAGCCTTTTGCACTTTCCCCTGTAGTGTGTCATCTTTCTTTATGTTATTCTCTTCTGTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00106	247025	250369	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000106s00011735.1	PF00230.15	MIP	31	266	4.70E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.316
SRR1783600	control	35.397
SRR1783602	moderate drought stress	25.003
SRR1811619	moderate drought stress	24.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.240
DRR006520	Root Summer glycyrrhizin high producing strain	39.503
DRR006521	Root Winter glycyrrhizin high producing strain	47.747
DRR006522	Root Winter glycyrrhizin high producing strain	46.759
DRR006523	Root Summer glycyrrhizin low producing strain	15.807
DRR006524	Root Summer glycyrrhizin low producing strain	16.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.928
DRR006526	Leaf Summer glycyrrhizin high producing strain	87.573

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	695.662
SRR2868004	Drought Stress (root)	511.436
SRR2967015	Control (root)	385.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	878.953
SRR9715740	Leaf	404.147
SRR9715741	Leaf	522.522
SRR9715739	Root	243.455
SRR9715742	Root	224.688
SRR9715743	Root	216.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.035
SRR8749028	MeJA induced 9h	44.469
SRR8749029	MeJA induced 9h	41.059
SRR8749030	Uninduced	2.425
SRR8749031	Uninduced	0.568
SRR8749032	Uninduced	5.528

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	440.435
SRR8400027	Control - Root	401.337