Gene detail

Gene detail information of Glyur000106s00011729

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28350.1	2.00E-47	auxin response factor 10
NR	KHN17140.1	1.91E-146	Auxin response factor 18 [Glycine soja]
Swissprot	tr\|Q9AV47\|ARFV_ORYSJ	4.00E-71	Auxin response factor 22
trEMBL	tr\|K7LKL9\|K7LKL9_SOYBN	3.00E-146	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000106s00011729.1
ATGTTCGTGGTCATGGATTCCATGGAGAGAAACTCAGAAAGGTGCTTAGATTCTCAACTGTGGCATGCCTGTGCGGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTCTACTTTCCTCAGGGTCACGCAGAACACGCACACGGGAAAGTAGATTTCGGTAAAACCCGGGTCCCACNACTCATCCCTTGTAGAGTCTCCGCCATAAAGTACATGGCAGACCCTGACAATGATGAAGTCTACGTGAAGATGAGGTTAACCCCTCTGAGAGAAGAACATGAATTGGATTCACAAGATGATGATTAAAGTGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAAGGGATTGGTGGTGGCACTGAATTATTCTCAATCCCTTCAGCTGGTTGGAACAACAACAACAACAACAACCAAGTGTTTGGTGGGTCTGGTGTTTTTTTGTGTGGAGGGAATGAGAATATATTGGGGAGAGTGAGAGGTGAATGTGTTGTTGAGGCTGTGAATTGTGCTGTTAATGGGAGGCCATTTGAGGTTGTGTACTACCCAAGGGCTAGTACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTGAAGGCTGCTATGCAGATACAGTGGTGTCCTGGGATGAGATTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGAAGATCCCCTTCGTTGGCCTGATTCTCCTTGGCGTCTTCTCAAGGTGGTGTGGGATGAACCAGATCTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTNGAACTAGTCTCAAACATGCCCACCTTCAACCTCTCTCCATTCTCACCTCCAAGAAAGAAACAAAGGTTCATCCAGGACCCATATTTTCACCTCATCAACAATCTCCCAGTGCCACCATCACCACTCTCCCCCAATCTCCTCAACAGTTACACCAACAGATCTCTCTGTAACAACAATGTTCAAGAATATAATGATAGTACTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTAACTCCATCTGATTTCCCTTTCAACAACATGATCCTTGGTGGGTTGTCAAGGCTTGAACACCACCACCATGCAGCTCAATCTGTTAGGCCTCCCTTTGGAACCTATAACAGGAGTAGCAGCAGCACTAATAAAACCAATGTTGACTTGTCTTGCTTGTTGACTGTGGGAAATCCTGGCCAAAGTTTTATTAAGGAATCCAATGAAGCAAAAGCACCCCACANCCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAGCAGAAGAGTTCTTCAAACTGCAGTGGCTCAGTTAGTACTNCAACTGGGAATAATAGTGTCTCTGAAGGGACTAATTCCCTGAAAACATCAAATGCTTCTTCTTCTGATGGTCTTGGTTTTGCTGCTTTGCATCAAAATAGTCCAGTTGAGAATTCTTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGCCTGATCTTGGAACCGAAAATGTTACCACGTTGTGTATGGCTTTGTAACAAATCAGCTGATTTCATCAGTTGCAATGCCAGTGAGTGAGTTCTTGAAGACATCAATGAGGCTAACTATTCTTAAACAGATTCCCTTTTGTTGTATAATTGCTGTTTTTTTTTTCCTTTGGCTTAAATTCTATTNAGGTGCAAGTTAACAAAAATATTCCTCATTTGGTTCAGAAAAATATTATGTTTTTCTAGAACTGAATAAACGCTTTGAATATGAACTTAAGGGGTAATATTTTCTTTAACTTGCACTTAACTGAAGTTTTCTCTGCTGTTAGTTTTCTTAAGGCAATGAGGGAGAATCCCTCTTCCGACTATGGANGATGTAACTACGAATTTCTATCAAGAAATGTTATCCTAGAGATTGTCTTTTGTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00106	198250	201294	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000106s00011729.1	PF06507.8	Auxin_resp	1	50	9.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.335
SRR1783600	control	2.320
SRR1783602	moderate drought stress	2.663
SRR1811619	moderate drought stress	2.592

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.510
DRR006520	Root Summer glycyrrhizin high producing strain	5.534
DRR006521	Root Winter glycyrrhizin high producing strain	0.680
DRR006522	Root Winter glycyrrhizin high producing strain	0.686
DRR006523	Root Summer glycyrrhizin low producing strain	37.853
DRR006524	Root Summer glycyrrhizin low producing strain	37.563
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.402

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.345
SRR2868004	Drought Stress (root)	10.658
SRR2967015	Control (root)	15.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.977
SRR9715740	Leaf	15.590
SRR9715741	Leaf	24.959
SRR9715739	Root	10.954
SRR9715742	Root	57.172
SRR9715743	Root	45.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.195
SRR8749028	MeJA induced 9h	9.843
SRR8749029	MeJA induced 9h	12.747
SRR8749030	Uninduced	16.212
SRR8749031	Uninduced	1.902
SRR8749032	Uninduced	4.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.527
SRR8400027	Control - Root	9.281