Gene detail

Gene detail information of Glyur000106s00011721.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38970.1	0	Zinc finger (C3HC4-type RING finger) family protein
NR	AES62132.2	0	zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
COG	YP_007132536.1	2.00E-23	von Willebrand factor type A [Stanieria cyanosphaera PCC 7437]
trEMBL	tr\|G7I519\|G7I519_MEDTR	0	Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313\|EMBL:AES62132.2}

Sequence

Transcript Sequence

>Glyur000106s00011721.1
CTAGTTTTGGGGGTTGCGGCGTTTTGTTGAGATCCAGAAAAACACAGAAATGGGAAGCAAATGGAAGAAAGCGAAGGTGGCTCTGGGTCTCAACCTGTGCATGTTCGTTCCCAGAACCTTAGACGACGACTCGCCGCCGTCCACGGTGGTTTCCGAGAGGTTGTCGGACGCTGCCCTTCTCTCGCCGGCGAACTGGGACATGGGTTCTTCCAGGCCAACCACGCCGGTGACTTCCTTCCACGGTTTGAAGCTCTCCAAAAGTGCCAGCAAATCCTCCAAGCAAACTTGCGCAATATGCTTAACCAAAATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAACGTGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATTCCCTTATCAGGTCCCAGTTTGGATCCGATCCCAGGCAGAGTTTCCCCGAGTCCAATAAATTGGCCCCAAAATGATGCTTTGATGGCTGTGGTCCACCGCCTACCTCTACCTCATCCTCGCCGAGATTTGAATAGGCGGCATATTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGATGATGATGAAGCCTTAAATCACCAACCTTCACTTTCTGAGAGAAGTACTTGTAGTAAGAGTACTGAAGATACTGATGTTGTTCGAGCAATGGAGATTAAAACATACCCAGAAGTATCTGCTGCTGCAGGGTCCAATACTTATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCTGCAGCTGCTGCTGCCAAAAGACAAAACCCTAGCAGAAACCAGACTAGCTTGACACAGATTTCACAGACTCCACGTGCCCCAGTTGACTTGGTCACAGTCCTTGATGTCAGTGGTAGCATGGCTGGAACTAAGCTTGCACTACTAAAAAGAGCTATGGGATTTGTTATACAGAACCTAGGCTCTAATGACCGGCTTTCTGTTATTGCTTTCTCTTCCACAGCTCGCCGCCTCTTTCCGCTATGTAGGATGACTGATTCTGGGCGGCAACAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGGGGTACCAACATTGCCGAAGGGCTGAGAAAAGGCGCTAAGATAATGGAAGACCGGAAAGAAAAGAATCCAGTTGCCAGTATTATTCTATTGTCAGATGGGCAAGATAATTACACTGTCAGCGGCTCTGGAACTGACCAGCCTCAACCAAATTACCATCTGCTTCTTCCTACTTCTATCAGTGGTCGCGATAATTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCATCAATGCACTCAATTTCAGAGAGTTCTGGTGGCACGTTTTCTTTCATTGAGACTGAAGCNGTGTTACAGGATGCATTTGCACAATGCATTGGAGGACTTCTGAGTGTCGTTATTCAGGAGCTGCAAGTGGCAATTGAGTGTATACATCCGGATCTCGGTCTTGTTTCACTTAAAGCTGGAAGCTACCCAAGCCGTTTGATGGCCGATGGGCGCAAAGGATTTATTGATGTGGGGGACTTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCGGTTAATGTCCCAGCTACATCAGGGAATGAAACATCATTGATAAAGGTCAAATGCGTTTACAAGGATCCCTTGACCCAGGAGACAGCAACATTGGAAAGTGAAGAAGTAAAGATTGAGAGGCCCAAAATAGCTGGGCAGGTTGTAATGTCACTTGAAGTTGACAGGCAGCGCAACAGGCTACAAGCAGCTGAGGCAATGGCCCAGGCACGGCTCGCAGCTGAACGGGGAGACCTGACTGGAGCAGTATTTATCCTTGAAAACTGTCGCAAGATGCTTGCAGAGACTGTATCGGCCAAATCTCATGACCGCCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGTGAGTAGGCACGTGTACGAAGCATCTGGGAGAGCATATATACTCTCCGGTTTGAGTTCGCACTCATGGCAAAGAGCAACTGCAAGAGGTGATTCCACCGATAGGTCAAGTCTTGTTCAAGCATACCAGACCCCATCGATGGCCGAGATGCTCACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGCCAGAGGCTTCTCCAACCACTGTTGTCATACAGATCACAACCAAGCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00106	131634	135684	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000106s00011721.1	PF13639.1	zf-RING_2	79	124	6.60E-10
Glyur000106s00011721.1	PF13519.1	VWA_2	281	465	1.40E-23
Glyur000106s00011721.1	PF14624.1	Vwaint	630	702	4.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.814
SRR1783600	control	45.302
SRR1783602	moderate drought stress	41.099
SRR1811619	moderate drought stress	41.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.800
DRR006520	Root Summer glycyrrhizin high producing strain	35.992
DRR006521	Root Winter glycyrrhizin high producing strain	6.927
DRR006522	Root Winter glycyrrhizin high producing strain	7.161
DRR006523	Root Summer glycyrrhizin low producing strain	36.405
DRR006524	Root Summer glycyrrhizin low producing strain	35.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.331
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.076
SRR2868004	Drought Stress (root)	56.080
SRR2967015	Control (root)	62.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.367
SRR9715740	Leaf	17.086
SRR9715741	Leaf	30.902
SRR9715739	Root	42.189
SRR9715742	Root	69.503
SRR9715743	Root	68.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.176
SRR8749028	MeJA induced 9h	66.236
SRR8749029	MeJA induced 9h	28.671
SRR8749030	Uninduced	33.742
SRR8749031	Uninduced	26.293
SRR8749032	Uninduced	18.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.218
SRR8400027	Control - Root	45.963