Gene detail information of Glyur000106s00011719 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04220.2 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_003536345.1 | 0 | PREDICTED: synaptotagmin-3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q7XA06|SYT3_ARATH | 0 | Synaptotagmin-3 |
| trEMBL | tr|I1LD00|I1LD00_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G35410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 119521 | 124235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011719.1 | PF00168.25 | C2 | 263 | 344 | 2.00E-24 |
| Glyur000106s00011719.1 | PF00168.25 | C2 | 428 | 509 | 7.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.149 |
| SRR1783600 | control | 1.211 |
| SRR1783602 | moderate drought stress | 0.916 |
| SRR1811619 | moderate drought stress | 0.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.495 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.373 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.020 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.917 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.011 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.363 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.961 |
| SRR2868004 | Drought Stress (root) | 9.751 |
| SRR2967015 | Control (root) | 6.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.161 |
| SRR9715740 | Leaf | 21.615 |
| SRR9715741 | Leaf | 6.822 |
| SRR9715739 | Root | 1.360 |
| SRR9715742 | Root | 1.317 |
| SRR9715743 | Root | 0.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.273 |
| SRR8749028 | MeJA induced 9h | 74.400 |
| SRR8749029 | MeJA induced 9h | 105.463 |
| SRR8749030 | Uninduced | 123.585 |
| SRR8749031 | Uninduced | 106.873 |
| SRR8749032 | Uninduced | 109.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.458 |
| SRR8400027 | Control - Root | 5.622 |