Gene detail information of Glyur000106s00011711 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54826.1 | 8.00E-40 | Zim17-type zinc finger protein |
| NR | XP_004496254.1 | 2.83E-99 | PREDICTED: DNL-type zinc finger protein-like [Cicer arietinum] |
| trEMBL | tr|I1NHH2|I1NHH2_SOYBN | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 68966 | 70046 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011711.1 | PF05180.7 | zf-DNL | 122 | 185 | 1.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.221 |
| SRR1783600 | control | 4.183 |
| SRR1783602 | moderate drought stress | 3.995 |
| SRR1811619 | moderate drought stress | 4.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.536 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.169 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.002 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.009 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.037 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.557 |
| SRR2868004 | Drought Stress (root) | 26.451 |
| SRR2967015 | Control (root) | 21.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.683 |
| SRR9715740 | Leaf | 13.866 |
| SRR9715741 | Leaf | 14.725 |
| SRR9715739 | Root | 5.106 |
| SRR9715742 | Root | 11.961 |
| SRR9715743 | Root | 6.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.460 |
| SRR8749028 | MeJA induced 9h | 30.570 |
| SRR8749029 | MeJA induced 9h | 37.090 |
| SRR8749030 | Uninduced | 23.547 |
| SRR8749031 | Uninduced | 18.328 |
| SRR8749032 | Uninduced | 23.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.251 |
| SRR8400027 | Control - Root | 20.541 |