Gene detail

Gene detail information of Glyur000106s00011709

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60740.1	0	ABC transporter family protein
NR	XP_003555441.2	0	PREDICTED: ABC transporter G family member 28 isoform X1 [Glycine max]
COG	YP_001302825.1	1.00E-38	multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503]
Swissprot	tr\|Q9MAG3\|AB24G_ARATH	0	ABC transporter G family member 24
trEMBL	tr\|I1NHH5\|I1NHH5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G32210.1}

Sequence

Transcript Sequence

>Glyur000106s00011709.1
ATGATGTGTGGTTGGAGGAACTCAGAGCATTTGTGGGTGCCCATTGTGGTGGTTATGATGATGATGAGCTTGTTCCTTGGGAAGATGCATTGCCAAGTGATGAATGACCATGACCAACTTGACAACCCTGCTGTTCTCCCCCTCATTACCCAGCTCGTCTATTCTCGACTCTCCAACTTGACTTCAGTTCTCAGTCATGAAATAAGCACACACTCCACTTTCTGTGTCAAAGATCCGGGTAATGGTACAAACATGGACTTCTATGTTCCTACTCACCATCTTTTTCTATTAGCTGGAGATATTACACAGCGTTTGTGTACGGCGGCAGAAGTGAAGTTTTACCTGAACGGTTTATTGGAGAGATCTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCATGTAGTGTTNCCTCAAGCCAGAAGATTGACCTTAAAAATTCAAAGGAGATACCTGCAAGAACTTCAAACTGTCAAGCATGTTGTGAGGGCTTCTTTTGTCCTCATGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTGGCTACACTCAATAAAACAACAGGCATATGTGAACCATATCTTTATCAACTGCCTCCAATGCAGCCAAACCATACCTGTGGAGGAGCAAATGTTTGGGCTGATGTCAGTAGCAGTAGNGAAATATTTTGCTCAGCAGGATCCTATTGTCCAACAACCACCAAAAGAATTCCTTGCAGTAGTGGGCATTACTGCAGGATGGGTTCCACTTCTGAGAAAAGATGCTTCAAGCTGAGTTCATGCAATTCAAACACAGCAACCCCAGATATGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGAAGAGTGGCCAAATCAAGAGAAGCAGCTGCTAGAAGTGCAAGGAATACAGCAAATGCACGCCAAAGATGGAAATTTGCAAAAGATGCTGCTAAGAAGGGCGCAACTGGGCTGCAAGCTCAACTATCACGCACATTCTCCCGGAAGAAGGATGCAACACATATGGAAAAAGTTAAAATTTTGAATCAAGAAACTTCTGAAACAGATGTTGAATTATTGTCACATTCACAACCTAACACTTCAAGCATGGTTGCAAGTTCATCTGCAATGCCAACAGAAAAGGGGAAAAAACGAAGTGGCCTAATGCAGATAATACATGAAATTGAAAATGACCAAGATATTAATGACAATCTTGCTATAGAAATAGAAACTAGAGATAAAAGTTCTACAGGGAATGTCTCAAAGGAAAAACAGCCACATACTCATACCCAAATTTATAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTGAGCAACAAGAAAACAAGAACCTTACATTCTCGGGAGTAATTAAAATGNCTAAAAACACTGAGAAAAGGAAGAGGCCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTTACATTGAAAGCTCAAAACAAACATATATTGAGATGTGTTACCGGGAAAATTAAACCTGGCCGCATCACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCTGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGGTCAATTCTTGTAAATGGAAGGAATGAATCAATTCACTCTTTTAAGAAAATTATGGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCTTTGGTTGGAACCGTGGAAAAACGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGTTGGATGAACCCACGTCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAAGCCCTTGAGGGAGTGAACATATGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATGTTTGACGACTTGGTACTTNTGGGTAAAGGTGGTCTCACGGTCTATCATGGATCTGCCAAGAAAGTCGAAGAATACTTTTCAGGTCTGGGGATCAATGTTCCAGAGCGGATCAATCCTCCAGATTACTACATTGACATTCTGGAGGGTATAGCAGTACCTGGTGGAAGTGCAGGACTCAGTTATAAAGAGCTGCCAGTTAGATGGATGCTTCATAATGGATATCCAATACCNCTTGATATGAGACAGAATGCAGCACAATTTGATATGTCCCAGAGTGTAAATTCAGCTAATGAAATAGATTCCAATGGATATGGTCATGTGGGAAAAACCTTTGCTGGAGAGTTATGGCAAGATGTGAGAAACAATGTGCAACTACAAGGGGAGAAGATAAGATTTAATTTTTTGAAATCCAGGGATTTATCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGCTGCAAAGCAACGATTACGAGAAGCTAGGATCCAGGCCATAGATTATCTTATTTTGTTACTCGCTGGAGCCTGCTTAGGATCAATTACCAAAGCGAGTGATCAAACGTTTGGCGCAGCTAGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCCCTGAGATCATTCTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTATCCAAAGACACAATTGATCACTTTAACACAGTGATCAAGCCTGNGGTGTACCTCTCTATGTTCTATTTCTTCACCAATCCAAGATCTACTTTTGCAGATAATTATGTTGTGCTGCTTTGTCTTGTATACTGTGTGACTGGCATAGCATACGCATTGTCCATATTTTTTGAACCCGGCGCGGCCCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAGTTTTGAAGGTTTTAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCATTAGTTATTGCAAATGCTGAAAGGTATCANGGAGTGTGGCTCATAAGTCGTTGTGGTTCCCTTTTAAAAAGTAGCTATAATCTTCATGATTGGAGTCTGTGNGTATCCATCCTCATTCTTATCGGTGTAATCGGCCGGGCAATAGCATTTTTCTGTATGGTCACCTTCCAAAAGAAGTAA

Protein Sequence

>Glyur000106s00011709.1
MMCGWRNSEHLWVPIVVVMMMMSLFLGKMHCQVMNDHDQLDNPAVLPLITQLVYSRLSNLTSVLSHEISTHSTFCVKDPGNGTNMDFYVPTHHLFLLAGDITQRLCTAAEVKFYLNGLLERSTSANYLKPNKNCNLTSWVSGCEPGWACSVXSSQKIDLKNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANVWADVSSSXEIFCSAGSYCPTTTKRIPCSSGHYCRMGSTSEKRCFKLSSCNSNTATPDMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARNTANARQRWKFAKDAAKKGATGLQAQLSRTFSRKKDATHMEKVKILNQETSETDVELLSHSQPNTSSMVASSSAMPTEKGKKRSGLMQIIHEIENDQDINDNLAIEIETRDKSSTGNVSKEKQPHTHTQIYKYAYAQLEKEKAEQQENKNLTFSGVIKMXKNTEKRKRPFIEISFKDLTLTLKAQNKHILRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVTGSILVNGRNESIHSFKKIMGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLVLXGKGGLTVYHGSAKKVEEYFSGLGINVPERINPPDYYIDILEGIAVPGGSAGLSYKELPVRWMLHNGYPIPLDMRQNAAQFDMSQSVNSANEIDSNGYGHVGKTFAGELWQDVRNNVQLQGEKIRFNFLKSRDLSDRKTPGVFKQYKYFLIRAAKQRLREARIQAIDYLILLLAGACLGSITKASDQTFGAASYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPXVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDSKVLKVLANLCYSKWALQALVIANAERYXGVWLISRCGSLLKSSYNLHDWSLXVSILILIGVIGRAIAFFCMVTFQKK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00106	54081	61031	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000106s00011709.1	PF00005.22	ABC_tran	525	675	4.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.248
SRR1783600	control	3.276
SRR1783602	moderate drought stress	2.546
SRR1811619	moderate drought stress	2.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.724
DRR006520	Root Summer glycyrrhizin high producing strain	3.651
DRR006521	Root Winter glycyrrhizin high producing strain	2.167
DRR006522	Root Winter glycyrrhizin high producing strain	2.058
DRR006523	Root Summer glycyrrhizin low producing strain	2.831
DRR006524	Root Summer glycyrrhizin low producing strain	2.845
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.168
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.579
SRR2868004	Drought Stress (root)	4.324
SRR2967015	Control (root)	4.396

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.604
SRR9715740	Leaf	0.250
SRR9715741	Leaf	0.567
SRR9715739	Root	0.372
SRR9715742	Root	1.301
SRR9715743	Root	1.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.778
SRR8749028	MeJA induced 9h	12.359
SRR8749029	MeJA induced 9h	7.606
SRR8749030	Uninduced	1.177
SRR8749031	Uninduced	1.507
SRR8749032	Uninduced	1.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.446
SRR8400027	Control - Root	4.413