Gene detail information of Glyur000106s00011704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04270.1 | 2.00E-57 | DHHC-type zinc finger family protein |
| NR | XP_003556243.1 | 1.18E-135 | PREDICTED: probable protein S-acyltransferase 15-like [Glycine max] |
| Swissprot | tr|Q500Z2|ZDH20_ARATH | 6.00E-79 | Probable protein S-acyltransferase 15 |
| trEMBL | tr|I1NHH9|I1NHH9_SOYBN | 4.00E-136 | S-acyltransferase {ECO:0000256|RuleBase:RU079119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00106 | 5256 | 11961 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000106s00011704.1 | PF01529.15 | zf-DHHC | 82 | 178 | 8.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.449 |
| SRR1783600 | control | 3.650 |
| SRR1783602 | moderate drought stress | 5.006 |
| SRR1811619 | moderate drought stress | 4.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.208 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.287 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.746 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.515 |
| SRR2868004 | Drought Stress (root) | 9.558 |
| SRR2967015 | Control (root) | 9.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.829 |
| SRR9715740 | Leaf | 2.415 |
| SRR9715741 | Leaf | 3.700 |
| SRR9715739 | Root | 1.144 |
| SRR9715742 | Root | 2.674 |
| SRR9715743 | Root | 2.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.833 |
| SRR8749028 | MeJA induced 9h | 5.247 |
| SRR8749029 | MeJA induced 9h | 3.250 |
| SRR8749030 | Uninduced | 3.126 |
| SRR8749031 | Uninduced | 0.643 |
| SRR8749032 | Uninduced | 0.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.535 |
| SRR8400027 | Control - Root | 6.242 |