Gene detail information of Glyur000105s00014214 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62950.1 | 3.00E-43 | Thioredoxin superfamily protein |
| NR | XP_004495991.1 | 1.73E-67 | PREDICTED: glutaredoxin-C11-like [Cicer arietinum] |
| COG | YP_004179299.1 | 6.00E-11 | glutaredoxin [Isosphaera pallida ATCC 43644] |
| Swissprot | tr|Q9LYC6|GRC11_ARATH | 6.00E-55 | Glutaredoxin-C11 |
| trEMBL | tr|B7FMA1|B7FMA1_MEDTR | 4.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK35919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 345107 | 345415 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014214.1 | PF00462.19 | Glutaredoxin | 14 | 75 | 4.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.449 |
| SRR1783600 | control | 0.702 |
| SRR1783602 | moderate drought stress | 8.088 |
| SRR1811619 | moderate drought stress | 6.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.334 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.916 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.555 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.966 |
| SRR2868004 | Drought Stress (root) | 46.801 |
| SRR2967015 | Control (root) | 67.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.454 |
| SRR9715740 | Leaf | 0.320 |
| SRR9715741 | Leaf | 1.202 |
| SRR9715739 | Root | 6.336 |
| SRR9715742 | Root | 25.792 |
| SRR9715743 | Root | 21.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.228 |
| SRR8400027 | Control - Root | 3.729 |