Gene detail

Gene detail information of Glyur000105s00014209

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03010.1	Phototropic-responsive NPH3 family protein
NR	XP_007144554.1	hypothetical protein PHAVU_007G165600g [Phaseolus vulgaris]
Swissprot	tr\|Q9SA69\|Y1301_ARATH	BTB/POZ domain-containing protein At1g03010
trEMBL	tr\|V7BI25\|V7BI25_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW16548.1}

Sequence

Transcript Sequence

>Glyur000105s00014209.1
GCCATGGTTCTCATAATTATATCATGTAATCCAACTCATCATTTAATTTCTACTTTTGTGACTTTACACATAATAGGAGGAGTTAATATATGCTAATACTAATGTGTGTAGCTTTCACTAGNCATTATTACAACTCCCAAAAGCACTGCAGTGCTTCCGGATTCCTGCAATTTCTTAAGACAAAAACCAAGTAAAAAGAAAGAAAAAGTCCACTCACTCACTACCTTTCACCGAAAAGTGCAAGCACACCTGCGTTTTCCTTGACTTTAAGATTAAATTTATTATAAACACTCATAGTAAAGTATGTTTCAAAATCACACCTCCATCCTTTAGCCACTGCATGAATNCATGTGACTTTCACTTCTCTACTACAAACTTTCCACGGATAGAGAATTAGGAAGAAGGCTGAAGAAGAAGTGGTCCTCAACACAAAGAATCTACCAAGAGAATGATACACAGTTTTATTTTGGCTTTGATTTAACTGGTATGGAATAATTTGATAACATAGTCACACTTCAATGACAGAGTGACAATTCTTAGTGGGGTGCAGAGGTATCACAATTGCCAGGTTTTGTGGAGAAGATGGGAGTTGTCACTGTGGGAGANTTGAAGCCCAGCATTTCAGGGAAGAGGACCTTTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAATGGCCAATATCTGATGTATCTAGTGATCTTACCATCGAAGTAGGAGCTTCAAGCTTTGCACTCCACAAGTTTCCTTTAGTTTCTCGGAGTGGAAGAATTAGGAAACTGCTGTTAGAAGCAAGAGATTCCAAAGTTTCACGCATAAGTCTCGCAAGTGTGCCAGGTGGAGCAGAGGCATTTGAGCTGGCTGCGAAGTTTTGTTATGGAATCAATGTTGAGTTCACACTCTCCAATGTTGCCATGCTAAGATGTGTATCCCATTTCCTTGAAATGACAGAAGACTACGCTGAGAAAAACTTGGAGACAAGAGCTGAAGCATATCTAAAAGACACAGTGCTCCCAAACATAGCAAACACAATATCTGTTCTTCACCGTTGTGAAACTCTCGTTCCCTTCTCAGAAGAGATCAACCTTGTTAGCAGGCTAATCAATGCAATTGCAAATAATGTTTGCAAGGAGCAGCTCACTTCTGGTTTGCAAAAACTTGACCACAACTTCCCTTCCAAAACCATCTCAATAAGCACCATGATGGAACCAGAAACACCCTCAGAATGGTGGGGGAAGTCTCTCAATGTTCTCAACCTTGATTTCTTCCAAAGAGTTCTATCTGCAATGAAGTCCAAGGGACTAAAACAAGACATCATCAGCAAAATCTTGATAAACTATGCACACAGCTCTCTTCAAGGGATGGTTGTTAGGGACCCCACAGTGGTTAAGGGAAGTTTACTAGACTTGGAATTGCAGAAGAGACAAAGGGTCCTTGTTGAAGCCATAACTGGTTTATTACCAACTCAATCAAGGAAAAGCCTGGTTCCAATTGCATTCCTCTCTAGTTTGTTGAAAGCTGCAATAGCAGCATCAGCATCTGGTTCTTGCAGATCTGATTTGGAAAGGAGGATTGGTCTACAACTCGACCAGGCAATTCTTGAAGACATCTTGATTCCAACAAGTTCACATCAAAATAATACACACGGCACAATTTATGACACGGATTCGATTTTGAGGATCTTTTCCATCTTTCTGAACTTGGATGAGGAGGATGAGGATGATACACGGTTGAGGGATGAGAGTGAAATGGTGTATGACTTTGACAGCCCAGGATCTCCAAAGCAAAGCTCAATTCTCAAGGTGTCCAAGTTGCTGGACAACTACCTTGCTGAAGTAGCACTAGACTCTAACTTGTTGCCATCAAAGTTCATCTCACTTGCTGAACTACTCCCAGATCATGCACGTATTGTTAGTGATGGACTCTATAGAGCTGTCGATATCTTCCTTAAGGTTCATCCAAACATAAAGGAGTCAGAGCGGTACCGCTTGTGCAAGACCATAGATTGCCAGAAACTGTCTCAAGAAGCCTGCAGCCATGCAGCACAAAATGAGAGGCTACCAGTGCAGATGGCAGTCCAAGTTCTCTACTTTGAGCAAATCAGGCTTCGCAATGCCATGAATGGGGGCCACAACCAGCTCTTCTTTGGTGGACTCAATGGTCAATTCCCTCAACGTTCAGGGAGTGGTGCAGGGAGTGGGGCCATTTCCCCTAGAGATAACTATGCGTCAGTGAGGAGGGAGAACCGAGAGCTGAAGCTTGAGGTGGCAAGGATGAGAATGAGGCTCACTGACTTGGAGAAAGACCATGTTTCCATGAAGCAGGAGCTTGTAAAGTCCCATCCTGCCAACAAGCTCTTTAAATCNTTCACCAAAAAACTGTGCAAGCTCAATGCTCTATTTCGGATCAATAGTATTAAGCCAAATGGTGTTAGTTCAGAGAGTCGGTTTCCTTTCCCAAAGAGAAGGCGTCACTCAGTTTCTTGACTACAAAAAACTTGTAACATATATCACAATGTATAGTATCTATAGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00105	319071	323653	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000105s00014209.1	PF00651.26	BTB	38	139	8.20E-06
Glyur000105s00014209.1	PF03000.9	NPH3	213	483	2.70E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.078
SRR1783600	control	39.327
SRR1783602	moderate drought stress	30.096
SRR1811619	moderate drought stress	29.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.150
DRR006520	Root Summer glycyrrhizin high producing strain	8.709
DRR006521	Root Winter glycyrrhizin high producing strain	0.615
DRR006522	Root Winter glycyrrhizin high producing strain	0.562
DRR006523	Root Summer glycyrrhizin low producing strain	4.889
DRR006524	Root Summer glycyrrhizin low producing strain	4.815
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.396
SRR2868004	Drought Stress (root)	11.999
SRR2967015	Control (root)	14.266

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.155
SRR9715740	Leaf	3.056
SRR9715741	Leaf	2.384
SRR9715739	Root	4.895
SRR9715742	Root	6.049
SRR9715743	Root	5.689

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.109
SRR8749028	MeJA induced 9h	0.053
SRR8749029	MeJA induced 9h	0.134
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.584
SRR8400027	Control - Root	20.173