Gene detail information of Glyur000105s00014204.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47810.1 | 6.00E-47 | nuclear factor Y, subunit B5 |
| NR | XP_003518964.1 | 4.96E-73 | PREDICTED: nuclear transcription factor Y subunit B-5 [Glycine max] |
| Swissprot | tr|O82248|NFYB5_ARATH | 1.00E-58 | Nuclear transcription factor Y subunit B-5 |
| trEMBL | tr|I1L7X0|I1L7X0_SOYBN | 5.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G02480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 281626 | 282069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014204.1 | PF00808.18 | CBFD_NFYB_HMF | 45 | 109 | 2.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.739 |
| SRR1783600 | control | 0.579 |
| SRR1783602 | moderate drought stress | 0.871 |
| SRR1811619 | moderate drought stress | 0.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.242 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.116 |
| SRR2868004 | Drought Stress (root) | 40.687 |
| SRR2967015 | Control (root) | 30.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.874 |
| SRR9715740 | Leaf | 0.201 |
| SRR9715741 | Leaf | 0.147 |
| SRR9715739 | Root | 6.608 |
| SRR9715742 | Root | 3.041 |
| SRR9715743 | Root | 5.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.744 |
| SRR8749028 | MeJA induced 9h | 1.987 |
| SRR8749029 | MeJA induced 9h | 2.367 |
| SRR8749030 | Uninduced | 2.023 |
| SRR8749031 | Uninduced | 1.129 |
| SRR8749032 | Uninduced | 0.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.512 |
| SRR8400027 | Control - Root | 3.260 |