Gene detail

Gene detail information of Glyur000105s00014200.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G21482.1	2.00E-178	cytokinin oxidase 7
NR	XP_003544550.1	0	PREDICTED: cytokinin dehydrogenase 7-like [Glycine max]
COG	YP_001547531.1	8.00E-70	FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9FUJ1\|CKX7_ARATH	0	Cytokinin dehydrogenase 7
trEMBL	tr\|I1M956\|I1M956_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G11280.1}

Sequence

Transcript Sequence

>Glyur000105s00014200.1
ATCCAAAACAGCCGCTATTTAAAGCCGAACCTGACCTGCAGCAAAAGCACGCACACCTCAATACTCAAACTCCGAAACGCTCAAACTCTCCAACGAAACCAAGAGAGGGAAATTAAAAAAACCACCCAAACCGTTCACACACTTCACACCATAAACATGATAGCTTACCTTGAACACTTCGTGCACGGAAACGACACAGAATCGACGCCAAACGACGACGTCGCGTCCCTCGACGGCTCCTTCCACTTCGGCGCCGCCGGCATCGCCAGCAAAGACTTCGGCGGCATGAAGTCCGCCCAGCCCCTGGCCGTAATCCGTCCCTCCTCCGCTGCCGACGTGGCAAGGGTGGTGAAGGCGGCGGCGAGAACTCCGAGCCTGACGGTAGCGGCACGAGGCAACGGCCACTCCATCAACGGCCAGGCCATGGCGGAGAAGGGGCTCGTTCTCGACATGCGCGCCATGGAAGAGGAGGAGGAGGAGCATTTGGAGCTCCTCTGGCTCGACGGTTCACCGTACGTCGACGTTTCGGGAGGGGCATTATGGGAAGAAGTTCTAAAACGCTGCGTTTCGCAGTTCGGACTCGCCCCGAGGTCGTGGACCGATTACCTCGGGTTAACGGTGGGGGGAACGCTCTCTAACGCCGGCGTCAGCGGCCAGTCCTTCCGTTACGGCCCCCAAACGTCCAACGTAACGGAATTGGAGGTCGTTACCGGTAAAGGCGATACCTTGGTTTGCTCCGAAACCCAAAACTCAGAGCTATTTTTCGCCGCGCTGGGTGGGCTGGGCCAGTTCGGTATCATAACCAGAGCCAGAATCGTTCTTCAAAAAGCCCCAGATATGGTGAGATGGATAAGGGTGGTTTACTCGGAATTTGAGGACTTCACTAGAGATGCAGAGAAGCTGGTGACTCGTCCAGAAGGTGACGGTTTTGATTACGTGGAAGGGTTCGTTGTGGTGAACAATAATGACCCGTGCAATGGGTGGCCCACCGTGCCGTTGAATCCGAACCAAAGGTTCGACCCGGATCGTGTCCCTCCCTCCGCTGGCCCCGTCCTCTATTGCTTAGAACTTGCCCTTCACTACCGTAAAACCGATCACCCTTCCGACGTCGATATGCAAGTGGATAGATTGCTTGGACGGCTGCGATTCGTCGAGGGTCTGAAGTTCGAGGATGATGTGATATACATGGAGTTCTTGCTACGTGTAAAGCGTGTGGAGGAGGATGCAAAAGCCAACGGCATCTGGGATGCACCTCACCCGTGGCTGAACCTGTTCGTGTCCAAGTCCAACATGGCTGAGTTTGATCGTGAAGTTTTCAAGAAGATCCTCAAGCACGGGGTTGGTGGTCCCATCCTAGTGTACCCACTATTGCGAAGCAAGTGGGATAGTCGACACTCGGTAGTGGTGCCCGACAGCAACATCTTCTACATAATAGCCCTTCTCCGATTTATTCCACCACCCCCAAGGGGACCACCTACTGAACTGTTGGTGGCACAAAACAGTGCCATTATTCAGTTGTGCTACAACAGAGGCTTTGATTTCAAGTTATATCTCCCTCACTACCAGTCACAGGAGAACTGGATGCGACACTTTGGGGATAAGTGGACTACATTCGTCGAGAGAAAGGCCTGTTTTGATCCCTTGGCTATTCTTGCACCTGGACAGAAAATTTTCGCCAGAAAGCAACCTTTCTCCACTATCACATAATAATAATAATAATAATAATAATAATAATTAATTCATTACATTATTGATCAGCTAGAGCCTAGATAGATTGTTTCTATTTCTCATGATATCGATCAACCAACCTTACCACTGTAATTTTTGTCTTCATTTTTTCCCCCTCCCCCTAATCTCCCCTCCTGTTTGTTTCTTTCTTTCTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00105	258790	265515	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00279	CKX	EC:1.5.99.12	Zeatin biosynthesis	map00908

Gene Ontology

biological_process

GO:0009690 cytokinin metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0019139 cytokinin dehydrogenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000105s00014200.1	PF01565.18	FAD_binding_4	49	194	2.30E-27
Glyur000105s00014200.1	PF09265.5	Cytokin-bind	226	506	4.10E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.806
SRR1783600	control	15.889
SRR1783602	moderate drought stress	20.237
SRR1811619	moderate drought stress	20.158

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.149
DRR006520	Root Summer glycyrrhizin high producing strain	42.749
DRR006521	Root Winter glycyrrhizin high producing strain	27.576
DRR006522	Root Winter glycyrrhizin high producing strain	27.480
DRR006523	Root Summer glycyrrhizin low producing strain	20.621
DRR006524	Root Summer glycyrrhizin low producing strain	21.280
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.145
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.825
SRR2868004	Drought Stress (root)	22.725
SRR2967015	Control (root)	31.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.317
SRR9715740	Leaf	43.086
SRR9715741	Leaf	40.378
SRR9715739	Root	23.157
SRR9715742	Root	45.628
SRR9715743	Root	37.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.652
SRR8749028	MeJA induced 9h	100.811
SRR8749029	MeJA induced 9h	75.437
SRR8749030	Uninduced	30.718
SRR8749031	Uninduced	70.580
SRR8749032	Uninduced	44.078

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.512
SRR8400027	Control - Root	17.425