Gene detail information of Glyur000105s00014195 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11402.2 | 6.00E-73 | Cysteine/Histidine-rich C1 domain family protein |
| NR | XP_003552205.1 | 1.74E-116 | PREDICTED: PRA1 family protein A1-like [Glycine max] |
| Swissprot | tr|Q8GWC3|PR1A2_ARATH | 2.00E-90 | PRA1 family protein A2 |
| trEMBL | tr|K7MTA5|K7MTA5_SOYBN | 6.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G41120.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 170602 | 180303 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014195.1 | PF03208.14 | PRA1 | 22 | 183 | 2.80E-35 |
| Glyur000105s00014195.2 | PF03208.14 | PRA1 | 22 | 54 | 2.60E-09 |
| Glyur000105s00014195.2 | PF03208.14 | PRA1 | 57 | 165 | 7.40E-11 |
| Glyur000105s00014195.3 | PF03208.14 | PRA1 | 28 | 189 | 3.10E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.920 |
| SRR1783600 | control | 6.217 |
| SRR1783602 | moderate drought stress | 5.490 |
| SRR1811619 | moderate drought stress | 5.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.203 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.042 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.863 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.735 |
| SRR2868004 | Drought Stress (root) | 9.062 |
| SRR2967015 | Control (root) | 9.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.839 |
| SRR9715740 | Leaf | 1.064 |
| SRR9715741 | Leaf | 9.756 |
| SRR9715739 | Root | 2.311 |
| SRR9715742 | Root | 7.287 |
| SRR9715743 | Root | 6.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.125 |
| SRR8749028 | MeJA induced 9h | 4.293 |
| SRR8749029 | MeJA induced 9h | 3.965 |
| SRR8749030 | Uninduced | 5.772 |
| SRR8749031 | Uninduced | 5.077 |
| SRR8749032 | Uninduced | 4.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.990 |
| SRR8400027 | Control - Root | 15.647 |