Gene detail information of Glyur000105s00014193 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06520.1 | 3.00E-17 | photosystem II subunit X |
| NR | XP_003588922.1 | 6.50E-57 | Ultraviolet-B-repressible protein [Medicago truncatula] |
| trEMBL | tr|G7I903|G7I903_MEDTR | 2.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:AFK45717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 137634 | 138005 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014193.1 | PF06596.6 | PsbX | 87 | 123 | 6.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.196 |
| SRR1783600 | control | 0.099 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.900 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.878 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.785 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 860.102 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 937.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.888 |
| SRR9715740 | Leaf | 0.552 |
| SRR9715741 | Leaf | 2.227 |
| SRR9715739 | Root | 0.324 |
| SRR9715742 | Root | 0.079 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.791 |
| SRR8749032 | Uninduced | 5.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |