Gene detail

Gene detail information of Glyur000105s00014192

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19530.1	5.00E-133	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_007161057.1	0	hypothetical protein PHAVU_001G039100g [Phaseolus vulgaris]
COG	YP_004457998.1	3.00E-71	spermine synthase [Acidianus hospitalis W1]
Swissprot	tr\|Q9S7X6\|ACL5_ARATH	3.00E-170	Thermospermine synthase ACAULIS5
trEMBL	tr\|V7CVV0\|V7CVV0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33051.1}

Sequence

Transcript Sequence

>Glyur000105s00014192.1
CACCCCCTCAATCCCTTCCCTCACCGCTTTGCCCTTTGCACCCATTACTCTTACTCATACCATTGTCGCTTCCTTCCCCTTTTTTCAACCATGGGAGAGGCTCCAGCGATTTTCTACGTCAATGGGTTCTCCAAGTTTTGCCATGAAACCCAGCCAAACCAACTAGTCCAAGACAGCGATAACAACAATAACGTCAACAACGAGCAGAACCATGACTCTTCCTGGTACGANGAAGTCATCGATGATGATCTCAAATGGTCTTTCAAGCTCAACAGTGTGCTCTATAAAGCGATTAGCNAATACCAGGACATAGCTCTGTTAGATACAAAGCGTTTTGGAAAGGCGTTGGTGCTTGACGGGAAGATGCAGAGTGCTGAAACAGATGAATTCATTTATCACGAATGCTTGATTCATCCCCCTCTCTTGTGTCACCCCAACCCCAAGACAGTGTTTATAATGGGAGGTGGGGAAGGTTCTGCAGCTAGGGAAGCCCTCAAGCACAAGTCAATGGACAAAGTGGTGATGTGTGATATAGACAAGGAGGTGGTAGATTTCTGTCGAAAATACTTGATTGCAAACAGGGAGGCATTTGCTGATAAGAAGCTCGACCTAGTGATCAATGATGCCAAGGCTGAATTAGAGATGAGAAATGAAAAGTTTGATATCATTGTTGGAGATCTGGCAGACCCACTTGAAGACGGGCCTTGCTATCAACTCTACACTAAATCCTTCTATGAGAAAGTCGTGAAGCCCAAGCTGAATGAGAATGGCATTTTTGTGACCCAGGCTGGACCCGCAGGTATCTTCACACACAAAGAGGTCTTCACTTCTATACATAAGACAATCAAACAGGTCTTCAAATATGTGATGGCATACACGACTCATGTACCATCCTTTGCTGATACATGGGGATGGGTTATGGCTTCAGACCAACCACTCTTGATTGATGCTGAGGAAATGGACAAAAGAATCGAAGCAAGGATAGATGGGGAACTGCTCTATCTAGATGGTGCCTGGCTGCAGAATGAAACTCACGTGTACACCGAAGACAATGCTAGATTCATTCCTGGACATGGCATGGCCCATCGTGTCTAAGGTTTCACAAGCCACCAGATTGAAGGGAAACTAACTCTTGCATGCTCTCACCTCTCAAAAGTAATTGCATCATACAACAGTACCCAGATTGATTTGACTTTTGAAGTTAATCTAAAAGGCACATGATTCAATTTTTGTAGTACATGCGCGTGTTTACTTTTTCATTTGCACATTACAATGGTACTACCGGTAGTGTTTAAGAGTATGTAAGAATTTGCTGTAGTGTACAGTTCAAGACAATAAGCATAACAATATAATAGATCAAAATAAGCACTAATCTTCAAATCCAAAAAGAATTGTTTATTTCTTCTTCTTATATTGAATATAATTCATCACGTATTAGAAACAAGTGCATAAATTGCATGGAACAGAAAGGTGGGGGAAAAACACTAGAATAATGAGAAACAGAAGATTAATTAATTAAAAGGTTTGAGACAAGACAAGACAGTAATTAAGTTCTTTTAACGGGATCAAAGTTGGAAACTCCTATAACGGCACCGAAGATTGCAGTTAGCACAACACCACCAGCGACAATGCTGAGCAAGAAGTTTTTGAGAGATGGGGAGAAGTCATTTCCAGCAGCATGAGCCACCTCTGGTATCACCATGGAGGCTGTCAAGGCAGCAGCTGTTAGACCCGTCACTGTTTTCTCCTTCAAAGACGCGTGGATCCCTCCAAGTTTGGATTTTGAGACATGGGTCCTCTTTGATTGAGGAAGGGGTAGTGGCTTCAAGAAGGGTGCAGAGGATGGGTGGTGGCTGTGCAGCTTTCTGTGGGTGGCTGGGCTCAGTGGCAGAGCCATTGAAACAGAAGCAGAGGCCATTATTGGGTTTGGTTGGACGCAAGAGGGGATTTGGGGTTAGATAGTGGTTGGAGAAATGGGTAGAATCAAATGTGAGATGGAAAAATGGAGATTTTTCTGATGATGTGGCAGATATTCTACCTGAGAATGGGGATAAGGTTATCTTCCGGGACTGTATCAAGTATCAACAGGTAGTGGTTGAGAAAGTCTTATTTTCTAGGAACCTTCTAGAATTTTTTTAGGTATGCTGCTGGTGCCTGGTGGAGGCTTTCTCTACACCCTTCTTGAGCAAAAAGTACACGAGTACTAGCAACACAACACACACTCTTCTCAATACCCTCATGGAATTCACGTGGGTCTCATCCCATTTCCAAAGTAGTGAATTTTAAGCAATTATAGAAAGTGTGTAGTTAGCATTTCTCTTTCACCAAGCTTTTGGATGGGGCAGAAAAACACATACACACAATAGTCCTACTCTGATGATAGATATTGCTGTTAGCAAAGGAACGGAGCAATACATAGAATACAAGTGATTAAATGCTAGTTATATGTATCAGTGTGATGGTCACAACGATAGTGAAATACTTAATATCTTCATGATTTATTAATTAGACGCGGCTAGTTTGAATAAGGAGCTTTTTGGAACAACGCTTGAGGCTACGGGTGATTGTTGCGAAGGATGGTCGAGTTGATGGATTTCCATCCCAGCAATGGCAAATAAGGTCAATGAGTTCTTCCGGCTGTCCAACATTATGATCAGAGGGAAGAACAGGCCGCAGCTTACCCTCTACAACTTCCATCGCAATCTAATAGTGACAACATGTTTAATTAAGTTTCATTCNTAATATATGCATATCACAAGTAAATTATATAAAAATTCAACCAAACTATAGGCAACATAAGATCAATGTGATATTATGATGATGATACCTTGGTGGGACCATATTCCGTCTCAATGTAGGGGTAATTTCCGGTTAGTAGCTCGTTCAGTATGACCCCAAAGCTATACACATCACATTTTTCATTGTAAGGTTCACATCGGATCACCTCTGGTGCCATGTACACGTATGTTCCTGAAAATAACACAAAACGGAAACCACATTAAAAATTCCCAACTTGATTCTGAGGCATTCCCATATGTCAGAAATGGTCTTTATTAGTAATGTCTTGCTGACAAGCTATAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00105	136469	142393	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000105s00014192.1	PF01564.12	Spermine_synth	47	281	6.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.707
SRR1783600	control	1.821
SRR1783602	moderate drought stress	1.638
SRR1811619	moderate drought stress	1.624

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.457
DRR006520	Root Summer glycyrrhizin high producing strain	17.502
DRR006521	Root Winter glycyrrhizin high producing strain	0.920
DRR006522	Root Winter glycyrrhizin high producing strain	0.792
DRR006523	Root Summer glycyrrhizin low producing strain	6.422
DRR006524	Root Summer glycyrrhizin low producing strain	6.692
DRR006525	Leaf Summer glycyrrhizin high producing strain	260.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	259.480

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.968
SRR2868004	Drought Stress (root)	16.096
SRR2967015	Control (root)	16.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	183.719
SRR9715740	Leaf	212.300
SRR9715741	Leaf	135.215
SRR9715739	Root	0.386
SRR9715742	Root	4.601
SRR9715743	Root	3.886

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.829
SRR8749028	MeJA induced 9h	1.196
SRR8749029	MeJA induced 9h	0.788
SRR8749030	Uninduced	1.706
SRR8749031	Uninduced	0.360
SRR8749032	Uninduced	2.995

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.471
SRR8400027	Control - Root	1.323