Gene detail

Gene detail information of Glyur000105s00014186

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20510.1	1.00E-59	alfin-like 5
NR	XP_002324777.1	1.14E-108	PHD finger family protein [Populus trichocarpa]
Swissprot	tr\|Q5XEM9\|ALFL5_ARATH	2.00E-89	PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBL	tr\|B9IKC9\|B9IKC9_POPTR	4.00E-109	PHD finger family protein {ECO:0000313\|EMBL:EEF03342.1}

Sequence

Transcript Sequence

>Glyur000105s00014186.1
GGGGGGGGGTCAGTCAAATAGTTTTCGCTATCCATCTTTCCCTCCATTTGCACACACCACACTCTCTCTGGTGAGTCTCTCTTCAGTTTCTCTGTGAGTGTTTTTCACTTTCCCTCCAACTTCTCCAAACACATGGACGGAGGTGCTTCGTACAATCCTCGTACGGTCGAAGAGGTCTTCCGGGATTTCACGGGTCGCAGAGCTGCCTTGATTAAAGCCCTCACCACTGATGTCGAAGAGTTCTACCAGCAGTGTGATCCAGTGGGAAGTCAATCTGCCAGCTGAGGAAGTGCCCCCTGAGCTTCCAGAACCAGCATTGGGNATTAACTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCGAATCATAGCAGTAACAAATTCAAATCCAAATCAAACTCTAAGCGAGGTTCTGAATCTCAGGCGAAGTATTCGAAAGCAATGCAAGCAATGCAATCAAAGGAAGAAGACGAGGAGGGTCTAGGCATGGATGAGGAAGATGATGAGGAACATGGAGAGACTTTGTGTGGGGCATGTGGAGAGAGCTATGCGGCGGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGAAAATGCGTGAAGATTACCCCGGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACCTTGACAGTGGCTATAGGAGGAGTCTTAATGGTGGTTGGTGACTATAATCTTGGCAATTTTATGACTACTAATTTGTTTTAGTAGGTCAGGCTTATTAGTCTTGCTGTCAATTTCAGGTATGTTATACTAGGTATATGAATATGAGCTGCCATCAAATTATCCAGAGGTAGGATATTTACTTCATAACTGGACTTAAATATTGTTCTGTTATGTGCTTCCTTAAGTTTTAATGTTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00105	111524	116494	-

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000105s00014186.1	PF12165.3	DUF3594	11	100	5.10E-53
Glyur000105s00014186.1	PF00628.24	PHD	161	210	2.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.536
SRR1783600	control	21.105
SRR1783602	moderate drought stress	40.779
SRR1811619	moderate drought stress	39.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.425
DRR006520	Root Summer glycyrrhizin high producing strain	31.744
DRR006521	Root Winter glycyrrhizin high producing strain	6.543
DRR006522	Root Winter glycyrrhizin high producing strain	6.299
DRR006523	Root Summer glycyrrhizin low producing strain	51.435
DRR006524	Root Summer glycyrrhizin low producing strain	51.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.076

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.475
SRR2868004	Drought Stress (root)	19.467
SRR2967015	Control (root)	30.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.891
SRR9715740	Leaf	18.075
SRR9715741	Leaf	15.553
SRR9715739	Root	17.308
SRR9715742	Root	19.125
SRR9715743	Root	16.904

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.327
SRR8749028	MeJA induced 9h	19.287
SRR8749029	MeJA induced 9h	28.037
SRR8749030	Uninduced	10.508
SRR8749031	Uninduced	6.252
SRR8749032	Uninduced	6.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.069
SRR8400027	Control - Root	35.956