Gene detail information of Glyur000105s00014184 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12020.1 | 3.00E-32 | 17.6 kDa class II heat shock protein |
| NR | XP_006453037.1 | 1.16E-52 | hypothetical protein CICLE_v10009756mg [Citrus clementina] |
| COG | YP_005887446.1 | 1.00E-15 | heat shock protein Hsp20 [Marinobacter adhaerens HP15] |
| Swissprot | tr|P05477|HSP21_SOYBN | 1.00E-52 | 17.9 kDa class II heat shock protein |
| trEMBL | tr|V4UJF9|V4UJF9_9ROSI | 4.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:ESR66277.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 102828 | 103322 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014184.1 | PF00011.16 | HSP20 | 59 | 164 | 2.50E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.422 |
| SRR1783600 | control | 0.473 |
| SRR1783602 | moderate drought stress | 0.965 |
| SRR1811619 | moderate drought stress | 1.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.950 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.452 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.684 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.469 |
| SRR2868004 | Drought Stress (root) | 2.825 |
| SRR2967015 | Control (root) | 2.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.901 |
| SRR9715740 | Leaf | 0.572 |
| SRR9715741 | Leaf | 1.196 |
| SRR9715739 | Root | 0.091 |
| SRR9715742 | Root | 0.573 |
| SRR9715743 | Root | 0.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.784 |
| SRR8749028 | MeJA induced 9h | 168.619 |
| SRR8749029 | MeJA induced 9h | 47.450 |
| SRR8749030 | Uninduced | 47.769 |
| SRR8749031 | Uninduced | 235.869 |
| SRR8749032 | Uninduced | 164.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.319 |
| SRR8400027 | Control - Root | 1.808 |