Gene detail information of Glyur000105s00014172 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20650.1 | 3.00E-37 | copper transporter 5 |
| NR | XP_004498836.1 | 4.41E-82 | PREDICTED: copper transporter 5-like [Cicer arietinum] |
| Swissprot | tr|Q93VM8|COPT5_ARATH | 2.00E-52 | Copper transporter 5 |
| trEMBL | tr|K7MN99|K7MN99_SOYBN | 2.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33491.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00105 | 39497 | 39925 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000105s00014172.1 | PF04145.10 | Ctr | 2 | 124 | 4.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.284 |
| SRR1783600 | control | 10.818 |
| SRR1783602 | moderate drought stress | 7.929 |
| SRR1811619 | moderate drought stress | 8.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.044 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.363 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.375 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.508 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.346 |
| SRR2868004 | Drought Stress (root) | 14.694 |
| SRR2967015 | Control (root) | 13.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.149 |
| SRR9715740 | Leaf | 7.356 |
| SRR9715741 | Leaf | 8.063 |
| SRR9715739 | Root | 23.458 |
| SRR9715742 | Root | 8.591 |
| SRR9715743 | Root | 12.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.980 |
| SRR8749028 | MeJA induced 9h | 3.708 |
| SRR8749029 | MeJA induced 9h | 4.544 |
| SRR8749030 | Uninduced | 2.369 |
| SRR8749031 | Uninduced | 1.306 |
| SRR8749032 | Uninduced | 2.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.848 |
| SRR8400027 | Control - Root | 19.030 |