Gene detail information of Glyur000104s00006035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44260.1 | 2.00E-101 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_003539842.1 | 7.23E-157 | PREDICTED: probable CCR4-associated factor 1 homolog 9-like [Glycine max] |
| Swissprot | tr|Q9LXM2|CAF1I_ARATH | 5.00E-128 | Probable CCR4-associated factor 1 homolog 9 |
| trEMBL | tr|I1LRJ8|I1LRJ8_SOYBN | 3.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G09830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 327598 | 328545 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006035.1 | PF04857.15 | CAF1 | 16 | 248 | 1.90E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.328 |
| SRR1783600 | control | 11.595 |
| SRR1783602 | moderate drought stress | 14.778 |
| SRR1811619 | moderate drought stress | 14.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 726.445 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 720.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.475 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.567 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 748.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 747.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 185.330 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 184.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.880 |
| SRR2868004 | Drought Stress (root) | 347.089 |
| SRR2967015 | Control (root) | 837.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 825.436 |
| SRR9715740 | Leaf | 628.775 |
| SRR9715741 | Leaf | 860.609 |
| SRR9715739 | Root | 2382.640 |
| SRR9715742 | Root | 2011.261 |
| SRR9715743 | Root | 1995.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 808.087 |
| SRR8749028 | MeJA induced 9h | 483.927 |
| SRR8749029 | MeJA induced 9h | 526.132 |
| SRR8749030 | Uninduced | 1629.081 |
| SRR8749031 | Uninduced | 728.004 |
| SRR8749032 | Uninduced | 744.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 152.623 |
| SRR8400027 | Control - Root | 290.111 |