Gene detail information of Glyur000104s00006029 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08380.1 | 6.00E-38 | photosystem I subunit O |
| NR | AFK44563.1 | 1.44E-55 | unknown [Lotus japonicus] |
| Swissprot | tr|Q949Q5|PSAO_ARATH | 3.00E-47 | Photosystem I subunit O (Precursor) |
| trEMBL | tr|I3SWC1|I3SWC1_LOTJA | 5.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:AFK44563.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 298596 | 302021 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.041 |
| SRR1783600 | control | 0.038 |
| SRR1783602 | moderate drought stress | 0.086 |
| SRR1811619 | moderate drought stress | 0.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.850 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.126 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.106 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 461.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 455.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.043 |
| SRR2868004 | Drought Stress (root) | 17.144 |
| SRR2967015 | Control (root) | 6.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 797.626 |
| SRR9715740 | Leaf | 488.397 |
| SRR9715741 | Leaf | 547.026 |
| SRR9715739 | Root | 0.055 |
| SRR9715742 | Root | 1.422 |
| SRR9715743 | Root | 1.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.153 |
| SRR8749028 | MeJA induced 9h | 6.113 |
| SRR8749029 | MeJA induced 9h | 5.066 |
| SRR8749030 | Uninduced | 12.183 |
| SRR8749031 | Uninduced | 1.504 |
| SRR8749032 | Uninduced | 22.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.298 |
| SRR8400027 | Control - Root | 5.872 |