Gene detail information of Glyur000104s00006023 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20580.1 | 1.00E-54 | Small nuclear ribonucleoprotein family protein |
| NR | XP_004503997.1 | 7.07E-90 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] |
| Swissprot | tr|Q43582|LSM4_TOBAC | 3.00E-13 | Probable U6 snRNA-associated Sm-like protein LSm4 |
| trEMBL | tr|I3SGN2|I3SGN2_LOTJA | 1.00E-89 | Uncharacterized protein {ECO:0000313|EMBL:AFK39424.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 280909 | 282696 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006023.1 | PF01423.17 | LSM | 11 | 74 | 4.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.014 |
| SRR1783600 | control | 14.945 |
| SRR1783602 | moderate drought stress | 15.768 |
| SRR1811619 | moderate drought stress | 15.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.433 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.572 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.941 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.108 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.272 |
| SRR2868004 | Drought Stress (root) | 34.359 |
| SRR2967015 | Control (root) | 36.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.136 |
| SRR9715740 | Leaf | 32.351 |
| SRR9715741 | Leaf | 22.061 |
| SRR9715739 | Root | 8.185 |
| SRR9715742 | Root | 15.265 |
| SRR9715743 | Root | 13.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 102.411 |
| SRR8749028 | MeJA induced 9h | 46.948 |
| SRR8749029 | MeJA induced 9h | 64.681 |
| SRR8749030 | Uninduced | 48.169 |
| SRR8749031 | Uninduced | 33.496 |
| SRR8749032 | Uninduced | 45.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.511 |
| SRR8400027 | Control - Root | 30.303 |