Gene detail

Gene detail information of Glyur000104s00006019.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27350.6	9.00E-121	OTU-like cysteine protease family protein
NR	KHN21165.1	0	OTU domain-containing protein 5 [Glycine soja]
trEMBL	tr\|I1LKP4\|I1LKP4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G18720.2}

Sequence

Transcript Sequence

>Glyur000104s00006019.1
TTACCATCACCGTTAAAACCCAAAACGTAGTCTCTCTTTTCGCTTCCCTTCTCTTCTCGACTTTTCTCGTTGCGGTGTTTCCTGTTCTCGCCTCTCGAAAACCCTAATCAAATAACCAATCCTCCTTTTCATTCCCCCTTTTCTAAATTTCAAAATCGTAATCATAATTTCGGGATTTTCCTTTCTTTTTCATCCCTCGTCACTGATCCCTGCGATTGATACTTTAAATTAAGCTGGCTCAGTGTTTTCCCACNATTTTTGGAGAATCTGTCAATTTTGCAAAAAAAAAAAAAACAGTGAAGTACAAAAAAATGCTGCCAAATTTTTATGCAGGTTGGGCTCGTGAAGGATTTTGAGCTTTCAGCGTAAAATTCGAATACAGATAAGAAGGTGTTATTGTCGATCGAAGTGGGAAGGTTTGGGTCTGATGATAATTGTTAGGGGAATGCGGAAATCGTTCTGCGAGGAGCTGAAGCACTCGTTCAGCGAGGGAATTGGCATCACTGCGCCCAAGGCTAGANCCCGCGACAAACTAATGAACACAACGCTCTTCGCTCTCTGAAACCCTAAACTCTTATTTAACTCTTAACTACCACACTGCCTGCGAAAATTTGGGTTGCGTTGCGTTGCGATGACTCGCGTTTTGGTTCAGAGGGGTTCCTCCGGCGGTGGTTCTTCGAACCCGAACCGCTNTTCCGGCTCTTCTTCGGCTCGGCCTGAGCCGCAGGTTTCGGTTCCACCACCGGCTCCGAAAGATGAGGAGAGTGGAGAGGAGGTAGTTGTCGGCGACGAGGTTTTGGAGGCCGGTGAGTGTGACAAAGCAAGGATTGAGGACTCTTTGGTAGGTGGTGTTACTATTCAATCCGAGCAGAAGGATGGTTCGTGTGATGATGAAGAAGTGGTCTCTGTTGTTGAGAGTGATGTTAGAGAGGAGGTTGTAGTGAAAGGGTTGAGTGGACTGAGAATTGAGGGCTCAAGTGGTGGTGGTGCTGCTGGTGCTGGTGGTGGTTCGTGTCCTCCGCCNCCGCCGCCACCTGTTCCGCCACAAAGGACTTCCTCAGCTAACTTGAATTCGAGGAGGAATGTGTTGGGAACTTCGAATTCTGGGTGTGTAGNTTCGTCTAGGAGAGGAGCATGTGCGACTGCGAGGCCTGTTGTTTCAGCTAGGACTTCCCCTGCTGGATCTCGCCCTTCTTCTCCCAGATCCCATAATGAAAGTGAGGGTTACAACAGTGCTGACGAACAAAANCCGTGCTCTGTTTCCTCTTATGATGATTTCGAAAGGGAGCGTCAGTTTGAAATTGATATCAGAAGGGCAAAAGGTTATGAAGTGAAAAAAATGATGGAGGATGGAAATTGTCTTTTCCGTGCTGTTGCAGATCAGGTGTATGGGGACTCTGAATTGTATGATTTGGTCAGGCAGATGTGTATTGATTACATGGAGCAGGAGAGAGATCACTTTTCTCAATTTATTACTGAAGGCTTCACATCATACTGTAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACAATGTTGAGATCCAAGTCATGTGTGAAATGTATAATCGCCCCATTCATATATACTCCTACACTACAGAACCTATCAATATCTTTCATGGAAGCTATAACACCGACACACCACCAATTCGACTGAGTTATCATCANGGAAATCATTACAACTCCCTGGTTGACCCACGGCGCTTGACAATTGGTGCTGGACTTGGGTTCAGCTGTCTTCGTGGAACTAATGTCGACAAAGATCAAGTCAAGGCTGCTATTAAAGCTCAACAAGATCAACAGATCAATAATGCACTTTTAGCTGAGGGACGATTTTACTCTGATCTAGAGCTGACGGAAAAGGAAATGGAACGCATGGTGATGGAGGTTTCTCGAGCTGAGTATCTTGCAGATGGTGCATTTAAGCAACAGCTTGGCCATAGAGAGTCATCTACCTCAAATGCTGAACCATCATCTTCTGGGGCAACAGGATCATCTGGCNCAGATCGCAAGAGGGAACATGGGAAAGAGCATGGTTGTGATCTTAGTAGCAGTATGCAGATGTTACTGTCAATGGGATTTAGTTACCTCCAAGCGATTGAGGCTTACAGCATATTTGGGGATGATGTTGATTCTATGGTTTGTTATCTGTTAGAAACTGGCAGCAGCAGCAGACGTAAAGGCAAGGCCACTGAATGACGAGCGATCCAGTTAAATAAATATCTTAGAGGTAGAACTTTAGTTTTCAAGCGTCAGCCAAATCGGTTTAATAAATGTCTTGTATTAAGATTTTTACTCTTTAATTCAGTTTCGTATCTGGCATATTCATGAATCATGANGGCCATAGGAAGGAAAAATCTGAGCAACGATAAATTTCTTTGGTTATTGGTAGCANGACCTAGAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	258740	264604	+

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12655	OTUD5, DUBA	EC:3.4.19.12	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00006019.1	PF02338.14	OTU	239	349	5.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.121
SRR1783600	control	37.910
SRR1783602	moderate drought stress	44.398
SRR1811619	moderate drought stress	44.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.079
DRR006520	Root Summer glycyrrhizin high producing strain	50.545
DRR006521	Root Winter glycyrrhizin high producing strain	27.098
DRR006522	Root Winter glycyrrhizin high producing strain	26.320
DRR006523	Root Summer glycyrrhizin low producing strain	48.714
DRR006524	Root Summer glycyrrhizin low producing strain	49.387
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.869

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.274
SRR2868004	Drought Stress (root)	43.583
SRR2967015	Control (root)	45.850

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.917
SRR9715740	Leaf	36.930
SRR9715741	Leaf	38.643
SRR9715739	Root	9.824
SRR9715742	Root	31.741
SRR9715743	Root	28.874

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.491
SRR8749028	MeJA induced 9h	26.728
SRR8749029	MeJA induced 9h	20.826
SRR8749030	Uninduced	21.608
SRR8749031	Uninduced	18.081
SRR8749032	Uninduced	14.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.987
SRR8400027	Control - Root	52.030