Gene detail information of Glyur000104s00006009 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44380.1 | 2.00E-66 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | AFK41071.1 | 4.51E-107 | unknown [Medicago truncatula] |
| trEMBL | tr|I3SLC9|I3SLC9_MEDTR | 2.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:AFK41071.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 220354 | 220908 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006009.1 | PF03168.8 | LEA_2 | 59 | 157 | 2.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.863 |
| SRR1783600 | control | 15.146 |
| SRR1783602 | moderate drought stress | 18.988 |
| SRR1811619 | moderate drought stress | 20.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.976 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.325 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.956 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.976 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.921 |
| SRR2868004 | Drought Stress (root) | 11.558 |
| SRR2967015 | Control (root) | 9.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.541 |
| SRR9715740 | Leaf | 38.326 |
| SRR9715741 | Leaf | 29.240 |
| SRR9715739 | Root | 30.269 |
| SRR9715742 | Root | 21.473 |
| SRR9715743 | Root | 20.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.360 |
| SRR8749028 | MeJA induced 9h | 1.851 |
| SRR8749029 | MeJA induced 9h | 1.366 |
| SRR8749030 | Uninduced | 5.623 |
| SRR8749031 | Uninduced | 0.808 |
| SRR8749032 | Uninduced | 0.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.179 |
| SRR8400027 | Control - Root | 6.964 |