Gene detail information of Glyur000104s00006004 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22390.1 | 4.00E-13 | Protein of unknown function (DUF3049) |
| NR | XP_003539162.1 | 6.66E-43 | PREDICTED: protein FAF-like, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q0V865|FAFL_ARATH | 4.00E-06 | Protein FAF-like, chloroplastic (Precursor) |
| trEMBL | tr|K7LQ57|K7LQ57_SOYBN | 2.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 209789 | 210565 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00006004.1 | PF11250.3 | DUF3049 | 127 | 178 | 8.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.743 |
| SRR1783600 | control | 0.676 |
| SRR1783602 | moderate drought stress | 0.707 |
| SRR1811619 | moderate drought stress | 0.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.239 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.901 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.457 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 127.308 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 126.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.188 |
| SRR2868004 | Drought Stress (root) | 0.307 |
| SRR2967015 | Control (root) | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.001 |
| SRR9715740 | Leaf | 67.749 |
| SRR9715741 | Leaf | 41.671 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.306 |
| SRR9715743 | Root | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.147 |
| SRR8749028 | MeJA induced 9h | 3.959 |
| SRR8749029 | MeJA induced 9h | 7.866 |
| SRR8749030 | Uninduced | 1.336 |
| SRR8749031 | Uninduced | 0.670 |
| SRR8749032 | Uninduced | 0.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.128 |
| SRR8400027 | Control - Root | 0.209 |