Gene detail

Gene detail information of Glyur000104s00006002

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22400.1	4.00E-111	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
NR	XP_007132445.1	0	hypothetical protein PHAVU_011G094900g [Phaseolus vulgaris]
Swissprot	tr\|Q9FMR1\|RGAP1_ARATH	9.00E-135	Rho GTPase-activating protein 1
trEMBL	tr\|V7AFV5\|V7AFV5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04439.1}

Sequence

Transcript Sequence

>Glyur000104s00006002.1
ATGACTGAGGTGCTACACTCTCCAACTACATCAACAACGACATGCCGTTTCTCTTCATCATCGTCGCCAACCACTCCTTCCTCTTCTGGTCATGGCACTCTCATTCTCACCAGCACCGACCAAGAAGAACCACCACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGGCCGTGACGGTTGGCGACGGTTTTTCTACGGCCACTGACTGTGACGCAGGGGAGGTCACAGACAGGGACAGGTCGACGCAGCAGCAAGAGGAGGAGGAGGAGCTGTCCCTTTTGGCCATTCTTGTGACCCTTCTCAGGAAGTCCCTCGTTGCTTGCACCNCTGACACGTCGTGCTCCATGGAGATCGGTTTCCCCACTAACGTGCGCCATGTTGCGCATGTAACCTTTGATAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTATGACACGAGAGGGAACAGTGTGCCAACTATTCTGTTACTAATGCAAAGGCACTTGTATGCTCGAGGAGGGTTGCAGGCAGAGGGAATTTTCAGAATTAATGCAGACAATAGTCAAGACGAATATGTTAGGGATCAATTGAATAGGGGAGTGGTCCCAGAAGACATTGATGTACATTCCTTGGCAGGGTTAATTAAGGCTTGGTTCAGGGAACTGCCTAGAGGTATTCTAGATTCTTTATCTCCTGACAAGGTAATGCAATGTCAGACAGAAGACGATTGTATTGAACTGGCAAGGCAGCTACCTCAAACCGAAGCTTCCCTTTTGGATTGGGCTATCAATTTGATGGCTGATGTTGTCCAAGAGGAGCATCTGAATAAGATGAATGCCCGCAACATTGCCATGGTTTTTGCACCAAACATGACTCAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTTATATCAAGGACACTGAGGGCAAGAAAGGATTCTGTTAANGTAGAACCATCACCTGGATTTCATTTAGAGCCTTCTGATGAGAATGTGGACCATAGTCTTTTGGGGTCCTGCCAGCAAGATGATGTTGCCACCTCAGGAAATGAAGAGGATCATGGGGAAACCTTTGCTTGTGAGAAAACTGTATTAGAATGTTCCCCTGAATCCATTCAACAAAACAAAGACTCAACTGAAGGAGAATCTGTTGGTTTGATAAGCTCATGTGAGGATCTAGTTTGTGATGAGATTGAGGATTTGTATTGTGTGTTTCCACCCAAAGGAAACGTTGGCAAGAGTAAGACTGGCCAACCAAGCAATTCAANTACTAAAAAAGGGGCCAAAAAAACCAGAGAGAAAATGGGCATTAGCAATTTGAGCCACATAGATTCAAGATCAGAGCGCATAGAAGCCTGGCGGTGAAGAAAGCACCACTGTGCTGGAGTGTAAATTGATTCTGACATTGTGGTTATTGTAATTGTATAAGTTTGTCTGGGGTCTTAAGTTGCAACTNGCAAGGACAAGTTTGTGAAGTGGTTTCAGTTTTATTATTTCCTTGGTTTGTTTGACTTGTCCGATTTCAAGAATGGCACTATGATCAACACTAACATTGTAATGAAATCTCATTTTCCTATGTGTGTTTACTTGTATTCTCATAGTTATTCCTGATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	204330	207501	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00006002.1	PF00786.23	PBD	123	153	1.00E-07
Glyur000104s00006002.1	PF00620.22	RhoGAP	163	298	1.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.416
SRR1783600	control	0.417
SRR1783602	moderate drought stress	0.821
SRR1811619	moderate drought stress	0.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.196
DRR006520	Root Summer glycyrrhizin high producing strain	0.173
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.695
DRR006524	Root Summer glycyrrhizin low producing strain	0.683
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.532
SRR2868004	Drought Stress (root)	5.040
SRR2967015	Control (root)	6.431

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.791
SRR9715740	Leaf	46.137
SRR9715741	Leaf	39.061
SRR9715739	Root	0.300
SRR9715742	Root	0.984
SRR9715743	Root	1.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.491
SRR8749028	MeJA induced 9h	0.752
SRR8749029	MeJA induced 9h	1.126
SRR8749030	Uninduced	0.500
SRR8749031	Uninduced	0.154
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.030
SRR8400027	Control - Root	5.310