Gene detail information of Glyur000104s00005992 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08350.2 | 1.00E-167 | Endomembrane protein 70 protein family |
| NR | XP_004506179.1 | 0 | PREDICTED: putative phagocytic receptor 1b-like [Cicer arietinum] |
| Swissprot | tr|F4HW17|TMN5_ARATH | 0 | Transmembrane 9 superfamily member 5 {ECO:0000305} (Precursor) |
| trEMBL | tr|V7AFU8|V7AFU8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04429.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00104 | 144209 | 148488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000104s00005992.1 | PF02990.11 | EMP70 | 57 | 534 | 2.90E-135 |
| Glyur000104s00005992.2 | PF02990.11 | EMP70 | 57 | 562 | 1.80E-143 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.070 |
| SRR1783600 | control | 9.162 |
| SRR1783602 | moderate drought stress | 5.552 |
| SRR1811619 | moderate drought stress | 5.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.022 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.723 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.542 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.537 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.306 |
| SRR2868004 | Drought Stress (root) | 11.241 |
| SRR2967015 | Control (root) | 11.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.514 |
| SRR9715740 | Leaf | 1.682 |
| SRR9715741 | Leaf | 2.627 |
| SRR9715739 | Root | 5.274 |
| SRR9715742 | Root | 7.229 |
| SRR9715743 | Root | 7.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.954 |
| SRR8749028 | MeJA induced 9h | 7.471 |
| SRR8749029 | MeJA induced 9h | 5.224 |
| SRR8749030 | Uninduced | 2.342 |
| SRR8749031 | Uninduced | 0.629 |
| SRR8749032 | Uninduced | 0.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.909 |
| SRR8400027 | Control - Root | 15.826 |