Gene detail

Gene detail information of Glyur000104s00005990.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08320.3	7.00E-106	bZIP transcription factor family protein
NR	XP_004506172.1	0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like isoform X3 [Cicer arietinum]
Swissprot	tr\|O24160\|TGA21_TOBAC	1.00E-96	TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBL	tr\|G7JIE0\|G7JIE0_MEDTR	0	BZIP family transcription factor {ECO:0000313\|EMBL:AES88309.1}

Sequence

Transcript Sequence

>Glyur000104s00005990.1
ATGGCGANCCAGAGAATAGGAGAAACGGGTTTGTCTGAGTCAGGGCCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCACGGGATTAGTACCCCAGCATCAAGCTTAATNAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAAGCAATTGTTCTGCAAGGAATTAAGATTAGAAATGATGAAGCCAAAGCACCTTTATTCACAAGCACAAGCAGGCCTGCAGCTACTACACTGGAAATGTTCCCTTCATGGCCAATTAGATTCCAGCAATCCCCAAGAGTNGTAGCCTCTCTCACTTCTCCATCTTTGACCAATTATCCATATGGAGGTTCTTCCAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACAACTACCACTCTTTCTCCAAGCAAAACGGATCAGCTTCAGTTTGAAACAGACTCTCCCATGAGTGTAGTAAAAGCATCTTCTTCAGATCATCATCATCATCAGGCTTTTGATCAGCAACAGCAACAACAACTTCAACAGGAGACAGCAACTGATCATGCCTCAAGAACAGGCCCCTTACAGAATCAATCAGCAGCCAAATCACCTCAGGAAAAGAAGAAAGGAGCTGGTTCCACATCACAGAAGACACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAGGCAGCAAAGAAAAGTCGTCTAAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAGGCTCGTCCACCTCGAACAAGACCTTCAAAGAGCGCGCTCTCAAGGACTATTCTTAGGTGGTGCTGTTGCTGGTGGCAATATAAGCTCTGATGATCATCGGCACANGGCGGAGCTCCGGACGGGGCTGCAGGCGGCGCTGTCGGACAATGAGCTGAGAGTGATAGTTGACGGATATCTGTGTCACTACGATGAGGTGTTCCGGCTGAAGGGGGTGGCTGTTAAATCAGATGTGTTTCACCTCTATAATGGCCTGTGGACTTCCCCAGCTGAGCGATGCTTCCTCTGGATAGGTGGTTTTAGACCCTCCGAGCTCATCACGCAGGCAGAAGACGCTCTCTCTCAAGGCCTCGAACAGCTTCACCACTCTCTCGTCGACACCATCGCCGGCGGGCCCATCGTTGACGGTGTCCAACAGATGGTCGTCGCCATGGGCAAGCTCGCCAACCTTGAAGGATTTGTCCGTCAGGCTGATAATTTGAGGCAACAGACCCTTCACCAATTATGTCGATTATTGACANTTCGTCAAGCAGCAAGGTGTTTCCTTGTGATTGGAGAGTATTATGGCCGTCTTCGGGCCCTTAGTTCTCTTTGGGCATCAAGACCTCGAGATCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	129008	136278	-

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005990.1	PF00170.16	bZIP_1	214	243	3.30E-08
Glyur000104s00005990.1	PF14144.1	DOG1	280	352	5.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.023
SRR1783600	control	9.288
SRR1783602	moderate drought stress	11.156
SRR1811619	moderate drought stress	11.075

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.080
DRR006520	Root Summer glycyrrhizin high producing strain	0.079
DRR006521	Root Winter glycyrrhizin high producing strain	0.037
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.157
DRR006524	Root Summer glycyrrhizin low producing strain	0.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.721
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	167.643
SRR2868004	Drought Stress (root)	221.026
SRR2967015	Control (root)	235.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.907
SRR9715740	Leaf	4.284
SRR9715741	Leaf	5.773
SRR9715739	Root	5.425
SRR9715742	Root	7.481
SRR9715743	Root	7.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.617
SRR8749028	MeJA induced 9h	86.098
SRR8749029	MeJA induced 9h	63.894
SRR8749030	Uninduced	153.305
SRR8749031	Uninduced	182.204
SRR8749032	Uninduced	136.685

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.026
SRR8400027	Control - Root	44.575