Gene detail

Gene detail information of Glyur000104s00005986

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08290.1	5.00E-89	WIP domain protein 3
NR	NP_001241401.1	4.48E-169	uncharacterized protein LOC100802773 [Glycine max]
Swissprot	tr\|Q9SGD1\|ZWIP3_ARATH	2.00E-118	Zinc finger protein WIP3
trEMBL	tr\|C6TEB1\|C6TEB1_SOYBN	2.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G09400.1}

Sequence

Transcript Sequence

>Glyur000104s00005986.1
CCATCATATAAGTGCTTGCTCGCTTTCCCTCATAAAGTCGATCTGGTCGACATAGCCCTTTCTGATCAGGCCGGAGAGAATTAATTTCACTAATAATCCAGTGATCTCTCTCTCTCTCTCTCTCTGAAGAAGAAGAAGAAGAATATGGGTTTGGTGGGGTGTGATAATCTTGCAGCGGATCACAAGAATCTATACCTCCATGCCCCAATTACTTTCATTGAGTGGCTCAAACCATCTTCCTCTCCTTCACAATATCTAAGTATAACTCCCTGCACACTATCATCATCATCTTCTTCATCTAATTCTTCTTCTTCTAATTCTTCTTCTACCACTCAGAACGAGCTAGTAGTCCAAGAGACTATCCAATTCTTACCCATTTTGAGCGGAAAGCCCTCAAAATTAGAGGAAGAAGAACATGGAGTGAAGGGTTTTGAGGTGAAAGAAGAAAAGGAGGAACAAGTGGGTGTGGCTTTGCACATTGGATTGCCTGCTGACGTCACCAAATTAGGAGATGAAAGTGATGATCATGATGATGATGAGAAGATGGTTTTCCATGTTAAGGAGGAAGAAGAAGAGGAAGAAGAAGGTAAGCACTCTAAGAGAAGCAGCAGCTTCAATAATGGTTTCAACAAGGAGAATATCAGGAGAAGGTTTTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATATGCAACAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGACATGGGTCTGAATATAGGAAAGGACCAGACTCACTTAAAGGTACACAACCAGCTGCAATGCTAAGGCTACCATGCTATTGCTGTGCACAGGGTTGCAAGAACAACATCAATCACCCAAGAGCTAAGCCCTTGAAGGACTTCAGAACACTCCAAACCCACTACAAGAGAAAACATGGGACAAAACCATTCATGTGTAGGAAATGTGGGAAAACATTTGCAGTGAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTTTGGTATTGCACTTGTGGTTCTGACTTTAAGCACAAAAGGTCCCTCAAAGATCACATTAGATCCTTTGGAAAAGGTCATGAACCACATCCTAATTCTCTTGATCATCATGCTTTTGAGGAGGAGAAGGAATGCATCACTGGTTCTGATGAAGATGAAGTTGTCATCGCTCATACATGATGATCTAACATTGTTATTCTAATTAAGGCTTTAATTAATGAGCCTGGTCACTACCCTTTGTGCTCAGTAACAAAAAATTCTCAACAGGGAGCGGTTTGCTACAGAGCACTTGCAGGGTGGTGATGATCTGAGCTATAATTATATCTATAGAGGTTATGGTTTGGACGATGGAGTTTGTTTATTGCTTTGTGGTTAATTAATTAATAAGACGGTTGCCTCAAGTGATGAAGTAGATGAATTTTCTTCTCGTGACCTCTTCAATGGAGAAAATTTATCCGCTTCATTACTAAAAGGACTTCCGGTATGTAAGACTTTTGTTAACATCTTTTGTGACACTTTGATATCAATTTGCTGCTATGGAAAACCATTGTCTGCTACACTATTATATATATGTGTGTTATGGAATCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	95748	100374	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005986.1	PF13894.1	zf-C2H2_4	185	204	0.00013
Glyur000104s00005986.1	PF00096.21	zf-C2H2	269	291	0.011

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.362
SRR1783600	control	40.500
SRR1783602	moderate drought stress	25.878
SRR1811619	moderate drought stress	25.676

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.212
DRR006520	Root Summer glycyrrhizin high producing strain	28.922
DRR006521	Root Winter glycyrrhizin high producing strain	7.246
DRR006522	Root Winter glycyrrhizin high producing strain	6.773
DRR006523	Root Summer glycyrrhizin low producing strain	19.639
DRR006524	Root Summer glycyrrhizin low producing strain	19.146
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.486
SRR2868004	Drought Stress (root)	22.137
SRR2967015	Control (root)	28.655

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.691
SRR9715740	Leaf	3.386
SRR9715741	Leaf	3.049
SRR9715739	Root	51.434
SRR9715742	Root	30.106
SRR9715743	Root	34.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.399
SRR8749028	MeJA induced 9h	10.750
SRR8749029	MeJA induced 9h	11.793
SRR8749030	Uninduced	7.903
SRR8749031	Uninduced	16.997
SRR8749032	Uninduced	8.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.922
SRR8400027	Control - Root	49.410