Gene detail

Gene detail information of Glyur000104s00005982.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08280.1	6.00E-117	Glycosyltransferase family 29 (sialyltransferase) family protein
NR	XP_004506165.1	0	PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1-like [Cicer arietinum]
trEMBL	tr\|Q4JEZ1\|Q4JEZ1_MEDTR	0	Sialyltransferase-like protein {ECO:0000313\|EMBL:CAJ15149.1}

Sequence

Transcript Sequence

>Glyur000104s00005982.1
ATGCCTAAGGGTTCCGCAGAAAAGGATGGATCTGAAACGGACACACCCAATTCCATGGATCCCTTTGCGGTTCCACACTTNGCAGCAACAAAACCCAGTTGTTCCCTAAAGAACCACTTCCCAATGAAACGCACCGTTCGCCCCCTCTTCCTCCTCCTCCTCCTCCTCGTCTTCGCCGCCACGCTCACCTCACGCGCCATGGTTCGCCGTGGAATACTCTCCATCGAGCTCGAGACCCGCGTCCTCATCCACGACCCCCCGCCGTCGCCGCCGCTCAACGCCACGCTCCTCCAACACGCCGCCGTCGAGATCGGCGAGGAGAAGTCCCGCCACGAGATCCAGCAGCTCCTCGACGGCAACTTCGCCAGCCAAGCCCGCCACAGGACATTCGTCTCGTGGCGGCGGTTCATCCACCACGACTCCACCGCCGACAAGAGCCTCCCGGCGACGCTTCGCTCGCCGCTGTTCTACCGATACTGGCTTGATTTCCGGCGAGTCCTCCACGACTGGTCGCGGAAGCGCCGGTTCCAACCCGGTATCATGTCCGANTTGACTCGGTCCGTGAAGGCCCCAATCGACCGTCACAACAAAAGAGTGGGTGGTGGTGACAACAAGAGGTACTCTTCATGTGCAGTTGTTGGGAACAGTGGAATCTTACTCAACAGAAACTATGGTTCTACAATTGATGCACACGAGGTTGTTATAAGGTTGAACAATGCAAGGGTTGATAACTATGAGAACAAAGTTGGGAAGAGAACAAGCATTTCGTTTGTGAATAGCAACATCTTGCACTTGTGTGCACGGAGGGCAGGGTGTTTTTGTCACCCTTATGGTCCTCACGTGCCTATTGTTATGTACATTTGCCAGGCCGTGCATTTCTTGGATTACACTGTTTGCAATGCCTCTCACAAGGCTCCTTTGTTGGTAACGGATCCTAGGTTTGATGTTTTGTGTGCTAGGATTGTTAAGTACTATTCCTTGAAGAGGTTTGTGGAGGAGACAGGGAAGGGTTTGGAACAATGGAGTTCTGCCCATGATGGGGCTTTATTTCATTACTCTTCTGGTATGCAGGCTGTGATGTTGGCTTTGGGAATCTGTGATAAAGTTAGCATTTTTGGGTTTGGAAAATCGGCTTCTGCTAAACACCACTACCACACTAACCAGAAGGCTGAGCTTCACTTGCATGANTATGAGGCTGAATATGCGTTTTACCGTGACCTTGTGGATGGGCGCAAGCCTATTCCTTTTATCTCGGATAAGTTCAAGGTTCCTCCTGTTGTCATGTATCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	81873	83165	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT29

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

molecular_function
GO:0008373 sialyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005982.1	PF00777.13	Glyco_transf_29	183	409	7.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.780
SRR1783600	control	5.785
SRR1783602	moderate drought stress	4.931
SRR1811619	moderate drought stress	4.800

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.894
DRR006520	Root Summer glycyrrhizin high producing strain	7.327
DRR006521	Root Winter glycyrrhizin high producing strain	1.181
DRR006522	Root Winter glycyrrhizin high producing strain	1.076
DRR006523	Root Summer glycyrrhizin low producing strain	16.698
DRR006524	Root Summer glycyrrhizin low producing strain	17.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.939
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.185
SRR2868004	Drought Stress (root)	14.614
SRR2967015	Control (root)	15.003

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.700
SRR9715740	Leaf	8.636
SRR9715741	Leaf	9.006
SRR9715739	Root	32.804
SRR9715742	Root	18.067
SRR9715743	Root	20.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.460
SRR8749028	MeJA induced 9h	8.618
SRR8749029	MeJA induced 9h	8.270
SRR8749030	Uninduced	1.838
SRR8749031	Uninduced	0.965
SRR8749032	Uninduced	1.399

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.829
SRR8400027	Control - Root	11.562