Gene detail

Gene detail information of Glyur000104s00005981

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27580.2	3.00E-41	A20/AN1-like zinc finger family protein
NR	XP_004506164.1	2.72E-74	PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3-like [Cicer arietinum]
Swissprot	tr\|Q9ZNU9\|SAP3_ARATH	1.00E-52	Zinc finger A20 and AN1 domain-containing stress-associated protein 3
trEMBL	tr\|G7JIG0\|G7JIG0_MEDTR	1.00E-72	Zinc finger A20 and AN1 domain stress-associated protein {ECO:0000313\|EMBL:AES88329.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00104	78116	78574	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000104s00005981.1	PF01754.11	zf-A20	10	34	1.00E-11
Glyur000104s00005981.1	PF01428.11	zf-AN1	93	131	1.10E-10

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	180.062
SRR1783600	control	198.074
SRR1783602	moderate drought stress	158.861
SRR1811619	moderate drought stress	151.652

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	122.052
DRR006520	Root Summer glycyrrhizin high producing strain	127.469
DRR006521	Root Winter glycyrrhizin high producing strain	1792.760
DRR006522	Root Winter glycyrrhizin high producing strain	1366.642
DRR006523	Root Summer glycyrrhizin low producing strain	199.546
DRR006524	Root Summer glycyrrhizin low producing strain	191.755
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.118

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.482
SRR2868004	Drought Stress (root)	189.644
SRR2967015	Control (root)	180.155

SRA Experiment	Description	TPM
SRR9715738	Leaf	109.052
SRR9715740	Leaf	76.048
SRR9715741	Leaf	99.305
SRR9715739	Root	579.860
SRR9715742	Root	301.467
SRR9715743	Root	295.993

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.261
SRR8749028	MeJA induced 9h	31.963
SRR8749029	MeJA induced 9h	59.215
SRR8749030	Uninduced	24.027
SRR8749031	Uninduced	29.342
SRR8749032	Uninduced	105.737

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	232.970
SRR8400027	Control - Root	201.249