Gene detail information of Glyur000103s00007474 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23290.1 | 8.00E-56 | prefoldin 5 |
| NR | XP_003592733.1 | 6.00E-89 | Prefoldin subunit [Medicago truncatula] |
| Swissprot | tr|P57742|PFD5_ARATH | 3.00E-70 | Probable prefoldin subunit 5 |
| trEMBL | tr|G7IE99|G7IE99_MEDTR | 2.00E-89 | Prefoldin subunit 5 {ECO:0000313|EMBL:AES62984.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00103 | 346465 | 347957 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000103s00007474.1 | PF02996.12 | Prefoldin | 29 | 144 | 7.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.344 |
| SRR1783600 | control | 53.844 |
| SRR1783602 | moderate drought stress | 52.516 |
| SRR1811619 | moderate drought stress | 51.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 69.332 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 106.781 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 104.578 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 80.310 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 89.023 |
| SRR2868004 | Drought Stress (root) | 75.460 |
| SRR2967015 | Control (root) | 85.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.474 |
| SRR9715740 | Leaf | 34.556 |
| SRR9715741 | Leaf | 37.325 |
| SRR9715739 | Root | 26.875 |
| SRR9715742 | Root | 40.109 |
| SRR9715743 | Root | 40.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 122.317 |
| SRR8749028 | MeJA induced 9h | 68.725 |
| SRR8749029 | MeJA induced 9h | 78.529 |
| SRR8749030 | Uninduced | 30.047 |
| SRR8749031 | Uninduced | 15.359 |
| SRR8749032 | Uninduced | 34.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 105.287 |
| SRR8400027 | Control - Root | 100.876 |