Gene detail

Gene detail information of Glyur000103s00007473

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29690.1	0	anthranilate synthase 2
NR	XP_004497238.1	0	PREDICTED: anthranilate synthase component I-2, chloroplastic-like [Cicer arietinum]
COG	YP_005444340.1	8.00E-143	anthranilate synthase component I [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|P32069\|TRPX_ARATH	0	Anthranilate synthase alpha subunit 2, chloroplastic (Precursor)
trEMBL	tr\|I1NF54\|I1NF54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G23680.1}

Sequence

Transcript Sequence

>Glyur000103s00007473.1
CACATGCTGCGGGATCGGTCACCATCGTCGGTCACTTGTCACTCCCTCTGTGTTTGGACGAAAAGTGGAAACNCAACACTCAAAACACTGGCTCACTCACTGTGTGCTTGTGCAGTTGTTGTGTAGTGTTGNCTGGTGAATAATAGGGGCGATGGAAACCCTAGCCCTTGGAAGTGTAGCTGCGTTTCCAACAATCTCCGTTTCCAGATCCACGTGGACCTCTCGTCCTTCTCTCAGTCTCAGATGCTCTGCTCAACCTGCTCCTCTAGTTGACAATGCGGAGAAGTTTCTAGAAGCTTCGAAGAAGGGGAACGTGATTCCTCTGTACCGATGCATATTTTCCGATCACCTCACACCTGTTCTGGCTTACCGGTGTTTGGTGAAGGAGGATGAGAGGGATGCTCCTAGCTTTCTCTTTGAGTCCGTTGAGCCCGGCCATCAACTCGGACGGTACAGTGTGGTTGGAGCACAGCCGTGTATGGAAATTGTGGCAAAAGAGAATACGGTTACTGTCATGGACCACGTGGAAGGGCGCAGGACCGAGGAAATGGCGGAGGATCCACTCGTGATTCCTCGTAGGATCATGGAGAAGTGGACGCCTCAACTCATTGATGAACTCCCCGAAGCATTTTGTGGTGGTTGGGTGGGTTATTTCTCTTATGATACAATGCGCTACGTAGAAAAGAAGAAACTTCCCTTTGTCAATGCCCCCATAGATGATAGAAGCCTTCCTGATGTTCATCTGGGCCTTTATGATGATGTGATTGTGTTCGACCATGTTGAGAAGAAAGCATATGTGATTCATTGGGTTCGGTTAGATCGATATTCTTCTGCTGAGGAAGCCCTCAATGATGGAGTGGACCGGCTCGAAACTCTAGTATCCCGGGTTCATGATATAATTACCCCAAGGCTGCCTGCAGGTTCAATAAAGTTATTCACTCGTCTTTTTGGTCCTAAACTGGAGCTGTCAAACATGACAAATGAGGAATACAAGAAGGCAGTGTTGCAGGCTAAAGAGCACATACTGGCTGGTGATATTTTTCAAATTGTCCTAAGTCAACGGTTTGAACGGAGAACTTTTGCAGACCCATTTGAAGTCTACAGAGCTCTGAGAATTGTTAATCCTAGTCCATATATGACTTATTTACAGGCCAGAGGAAGTATTTTGGTTGCTTCAAGTCCAGAAATTCTTACACGGGCAAAGAAGGGAAAAATCACTAATCGACCCCTTGCTGGGACTGTTAGAAGAGGGAAAACACCAAAAGAAGACATAATGTTGGAGAAAGATCTTTTGAATGATGAAAAACAATGTGCAGAGCATGTAATGCTAGTTGATTTGGGGAGAAATGATGTTGGAAAGGTCTCCAAACCGGGTTCTGTTCAAGTTGAAAAACTTATGAATATTGAGCGCTATTCCCATGTTATGCACATAAGCTCAACAGTCACTGGGGAGTTATTAGATCACTTAACAAGCTGGGATGCGTTGCGTGCGGCATTACCTGTTGGTACAGTTAGTGGAGCACCAAAGGTGAAAGCCATGGAGTTGATTGATCAGTTGGAAGTGGCAAGACGTGGGCCATATAGTGGGGGATTTGGAGGGATATCTTTTTCTGGTGATATGGACATTGCCCTTGCTCTGAGGACCATAGTTTTCCCTACTAATACTCGCTTTGACACAATGTACTCGTACAAGGATGTGAACAAGCGCAAAGAATGGATTGCCCATCTCCAGGCTGGAGCAGGAATCGTGGCTGACAGTGATCCAGATGATGAGCTAAGGGAGTGTGAGAACAAAGCTGCAGCCCTTGCCCGTGCTATTGATCTCGCNGAATCTTCATTTGTTGACAAATGATTTTGGGTTTATCCATCATCTGTGATGCTGCTTGACAATTGACTTTTGTAAAGGGGAGAGGAAATTTGGGGGGCAGATGGTGAGATTGTTATCATCAAGGTCTAAGGAGAATCCCGGAAACCATCTTATCTTATGTTATATAAAGGAAATGTAATGTTTTGTCTTATTTACAATTTTTTTGTCATCTTATTTACAATTTTGTATTGTCTTATTTACAATTTATTCCTGTCCATTACATGCTTTTTTTTTTGGTCAACAAGTCCATTACATTCTTAAGCTGTGGCTCAACAAAACCATATAAGGAAGAGGATGGAGTTGGATGAGTCCTGGAAATAAATAGACGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	338452	343233	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01657	trpE	EC:4.1.3.27	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Quorum sensing	map02024
			Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

biological_process

GO:0000162 tryptophan biosynthetic process

GO:0009058 biosynthetic process

molecular_function

GO:0004049 anthranilate synthase activity

GO:0016833 oxo-acid-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007473.1	PF04715.8	Anth_synt_I_N	65	216	6.10E-34
Glyur000103s00007473.1	PF00425.13	Chorismate_bind	277	548	1.20E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.716
SRR1783600	control	73.016
SRR1783602	moderate drought stress	106.004
SRR1811619	moderate drought stress	105.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	95.142
DRR006520	Root Summer glycyrrhizin high producing strain	94.237
DRR006521	Root Winter glycyrrhizin high producing strain	25.061
DRR006522	Root Winter glycyrrhizin high producing strain	24.330
DRR006523	Root Summer glycyrrhizin low producing strain	75.155
DRR006524	Root Summer glycyrrhizin low producing strain	74.609
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.760
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.574

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.265
SRR2868004	Drought Stress (root)	54.593
SRR2967015	Control (root)	62.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.099
SRR9715740	Leaf	17.506
SRR9715741	Leaf	33.540
SRR9715739	Root	33.921
SRR9715742	Root	77.246
SRR9715743	Root	70.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.300
SRR8749028	MeJA induced 9h	41.402
SRR8749029	MeJA induced 9h	41.773
SRR8749030	Uninduced	5.889
SRR8749031	Uninduced	2.573
SRR8749032	Uninduced	8.830

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	93.035
SRR8400027	Control - Root	98.355