Gene detail

Gene detail information of Glyur000103s00007470

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19960.1	myosin 1
NR	XP_004497240.1	PREDICTED: myosin-J heavy chain-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LHE9\|MYO1_ARATH	Myosin-1
trEMBL	tr\|I1NF52\|I1NF52_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G23660.1}

Sequence

Transcript Sequence

>Glyur000103s00007470.1
ATGTCTCAGACAGCTGGTGTCCCACCTGCTTTCCAGTCCATCAAATCGTTGCCTCCTGAGTTCAAGTATACTAATAATCCAAACTGTGGAAACATTAGATTGAGAAGCACTGATCTGATTGGATCAAATGGTCATGAAAATGGTGCACTAGTCAGGGGGGTTTCTAAGGAAGCTCACAACCGTGCTGGTGACATGGATCATTTTGATGAGGAATCGCCATATGGTGGAAAAGGTGAATCGTTTGAAGACAGGCCATCGTATGCTAATGAAGACTTGGCATCTGTTTCGTTGCCCCTCCCATCAGTTTCGACGTCCTCTAGGGAAAGCAGATGGAATGATACAACTCCTTATGCTTCNAAGAAGAAGCTTCAGTCCTGGCTTCAACTTTCTAATGGGGATTGGGAGCTTGTGAAGATAATATCAACTTCTGGAACAGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGATGAAATTTTGGTACCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAATATAGATACAATCAAAATATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCCNTAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAGTGACTATATTGAAGCCTACAAGTGTAAATCAATTGAAAGCCCTCATGTATANGCAATTACAGACACAGCCATCAGAGAAATGATACGTGATGAAGTTAATCAATCAATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAAATTCACTTCAGCGAAACTGGAAAAATATCTGGTGCAAATATTCAAACATGTAAGTTTACTATTGAATTGTGGTTCAAACTTTTTTTGTTGGAAAAGTTTTACTTGGNATGTGAACAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCGCCATCTCTCAGGGAGAAACTAAATCTACGAAATGTGGAAGACTATAAATATCTGAGACAGAGCAATTGTTATTCAATTACTGGCGTTGATGATGCAGAAGAATTTTGTGTAGTCATGGAAGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGNTTGCTGCGGTATTATGGTTAGGAAACATATCATTTACTGTGATCGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAGGGGCTGTTCAGCGCTGCAAAGTTGATTGGCTGTGACATTGAAGATCTGAAGTTGACTTTATCTACTCGCAAAATGAAAGTTGGCANTGATATTATTGTCCAGAAGTTGACGCTATCACAGGCTATGGATGCAAGAGATGCTTTGGCGAAGTCAATATATGCTTGCCTATTTGATTGGCTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGACGCACTGGCAGATCTATCAGTATTCTAGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCNAATGAAAGATTACAGCAACACTTCAATCGCCATTTATTCAAGTTGGAACAGGAGGAATATATCCAAGACGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCATTGGGGCTACTATCTCTGTTAGATGAAGAGTCCACTTTCCCAAATGGAACAGATTTAACATTTGCAAACAAGCTTAAGCAGCATTTAAATTCTAATTCATGCTTCAAAGGAGAACGAGAAAAAGCNTTTACTGTGTGTCATTATGCAGGGGAGGTCAATTATGATACAACTGGATTCCTAGAGAAGAACAGGGACCTATTACACTTGGATTCCATCCAGCTTCTATCCTCAAGCAAATGTGATCTTCCTCAGATATTTGCATCCCATATGCTTACTCAATCTGAGAAGCCTGTAGTTGGTCCCTTACACAAGTTAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTGTTCCAACTGATGCAACGTTTAGAGAGTACCACACCACATTTTATTCGCTGCATTAAGCCCAATAACATCCAATCACCTGGATCATATGAGCAAGGCCTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCTTAGAAGTTGTTCGAATATCAAGATCGGGCTTTCCAACTAGAATGTCTCACCAAAAGTTTGCTAGAAGATATGGTTTTCTTCTCCTAGATAATGTCGCATCTCAGGATCCACTTNGTGTTTCTGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTCTTCCGAACAGGGCAGATTGGAGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTGCAAAGTTGCTTCAGGGGTTATAAAGCTCGTTGTCATCGCAAGGAGCTTTTGNGAGGAATCACTACTCTTCAGTCATTTATTAGGGGAGAGAAAAGCAGAAAGGGATATGCATCTTTGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGCACATGAAAACAGTATTTGCAAGAAACAGAATNAAGACTACTCATGATGCTGCAGTTGTCATACAATCATTTATTCGTGGGTGGTTAGTCAGAAGATTCTCAGGAGATATAGGATTATTAAAATCNGGAGGCATGAAGGCTAACGAGTCAGATGAGGTTCTAGTCAAGTCCTCTTTCCTAGCTGAATTACAACGCAGGGTACTTAAGGCCGAAGCTGCCCTGAGAGAGAAAGAAGAGGAAAATGACATTCTTCACCAACGGATTCAACAGTATGAGAGCAGATGGTCTGAGTATGAATTGAAAATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGGTCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCCATGGATGATTCTGAAAGGAATTCAGATGCATCTGTTAATGCAANTGATGAGAGGGATTTCAGCTGGGATATGGGAACTAATCACAGGCGCCAAGAAAGCAATGGAACAAGATCCATGAGTGCTGGTTTGAGCGTTATAAGTCGGTTGGCTGAAGAATTCGAGCAAAGGAGTCAAGTATTTGGTGATGATGCNAAGTTCTTAGTTGAGGTAAAATCTGGTCAAGTGGAAGCAAGTTTGAACCCAGACCGAGANCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGTGCAAGACTGCGTGAAACNAAGCTTATTTTACATAAACTTGGAAGTGAAGAGGGTTCAATTGAGAAAGTGAAGAAGAAGTGGTGGGCNAGAAGGAATAGTACAAGGATAAATTGATTTTTATTTTTCCTTCTGGGGTTTGGTTTGGCTTTGGTCTATACACTGTTTTTAGGGCATTGCCAACTATATATCCGAAAATGAGGAAAAGACAATAGGAAAAATGAGATAGGGATAGGAAGAGTCCAAGGATGAATGAATTATTTACTGTAATTAGGTTAGCTGCTGCTTGCCTTTTTTATTTGTCAGAAATATCTGCACGAGTTGTGTAGTGTAGTGTTTTACTGGTTAGATGCTACAAGGCATGTGATTCGTGTATATTATC

Protein Sequence

>Glyur000103s00007470.1
MSQTAGVPPAFQSIKSLPPEFKYTNNPNCGNIRLRSTDLIGSNGHENGALVRGVSKEAHNRAGDMDHFDEESPYGGKGESFEDRPSYANEDLASVSLPLPSVSTSSRESRWNDTTPYASKKKLQSWLQLSNGDWELVKIISTSGTESVISLPDGKVLKVKDEILVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAXNPFKKVPLYGSDYIEAYKCKSIESPHVXAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFTIELWFKLFLLEKFYLXCEQSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLRNVEDYKYLRQSNCYSITGVDDAEEFCVVMEALDVVHISKGDQENVFAMXAAVLWLGNISFTVIDNENHVQAVEDEGLFSAAKLIGCDIEDLKLTLSTRKMKVGXDIIVQKLTLSQAMDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVCHYAGEVNYDTTGFLEKNRDLLHLDSIQLLSSSKCDLPQIFASHMLTQSEKPVVGPLHKLGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNIQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLXVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYKARCHRKELLXGITTLQSFIRGEKSRKGYASLLQRHRAAVIIQKHMKTVFARNRXKTTHDAAVVIQSFIRGWLVRRFSGDIGLLKSGGMKANESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRIQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNAXDERDFSWDMGTNHRRQESNGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRXLRRLKQMFEAWKKDYGARLRETKLILHKLGSEEGSIEKVKKKWWARRNSTRIN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	317523	328988	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016459 myosin complex

molecular_function

GO:0003774 motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007470.1	PF00063.16	Myosin_head	175	851	2.50E-216
Glyur000103s00007470.1	PF00612.22	IQ	869	884	0.041
Glyur000103s00007470.1	PF00612.22	IQ	938	955	5.00E-05
Glyur000103s00007470.2	PF00063.16	Myosin_head	175	833	8.00E-226
Glyur000103s00007470.2	PF00612.22	IQ	851	866	0.04
Glyur000103s00007470.2	PF00612.22	IQ	920	937	4.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.077
SRR1783600	control	3.029
SRR1783602	moderate drought stress	2.098
SRR1811619	moderate drought stress	2.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.796
DRR006520	Root Summer glycyrrhizin high producing strain	2.813
DRR006521	Root Winter glycyrrhizin high producing strain	0.698
DRR006522	Root Winter glycyrrhizin high producing strain	0.636
DRR006523	Root Summer glycyrrhizin low producing strain	4.742
DRR006524	Root Summer glycyrrhizin low producing strain	4.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.121
SRR2868004	Drought Stress (root)	27.054
SRR2967015	Control (root)	17.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.780
SRR9715740	Leaf	59.847
SRR9715741	Leaf	57.146
SRR9715739	Root	0.392
SRR9715742	Root	2.570
SRR9715743	Root	2.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.849
SRR8749028	MeJA induced 9h	21.144
SRR8749029	MeJA induced 9h	12.362
SRR8749030	Uninduced	17.506
SRR8749031	Uninduced	38.468
SRR8749032	Uninduced	7.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.115
SRR8400027	Control - Root	15.770