Gene detail

Gene detail information of Glyur000103s00007468

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08340.1	8.00E-105	Nucleotidylyl transferase superfamily protein
NR	XP_003535768.1	0	PREDICTED: uncharacterized protein LOC100808911 [Glycine max]
COG	YP_003337857.1	2.00E-14	bifunctional riboflavin kinase/FMN adenylyltransferase [Streptosporangium roseum DSM 43021]
Swissprot	tr\|Q8VZR0\|RIBF2_ARATH	3.00E-128	FAD synthetase 2, chloroplastic (Precursor)
trEMBL	tr\|I1LF92\|I1LF92_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G43240.1}

Sequence

Transcript Sequence

>Glyur000103s00007468.1
CTTTATCTTAAACCAGCAACCGGAAAGTGGTGAAAATTTGATGAAGCAGTGCAATGTTGGGTGGCGGTGTCTGTCGTATTTCGCACCATTTTCGAGAGTGCGACCTCCACTATTTCCATTTGGGTGCAGTAGGCTTCAGATTCAGTTTCTGTGGTCTCCAAAGTTTCCACCTTTCGTTCCCACCGCCTCTAAAACCTCGTTGGGGAGGAGGCATCGCCATTACTTCGAAGCCAAACACAGTGCCATCGAAAAACTGCTGTTCTGCCACCCCATCTAAGTCCCCTGGAGAAATTCCCCTCCTTTTCGATTGTTTCAGCCAACAAGAAGATGAACGGGAAATTCTCTCTGATGGAATATCTGCAGTGGCAGGTGGAATTGTAGCATTGGGAAAGTTTGATGCTCTGCACATAGGTCACCGAGAACTTGCAATTCAAGCATCAAGGGCTGGACATCCATTTCTGTTATCATTTGTTGGCATGGCAAAAGTACTTGGTTGGGAACATAGGGCTCCCATAGTTGCTAAGTGCGACCGAAAGCGCGTCCTTTCATCTTGGGTTCCTTATTGTTGTAACATGGTCCCGGAAGAGTTTCAGGTTGAGTTTTCAAGCGTGCGTCATCTCAGTCCACGACAGTTTGTTGAGAAGTTATCGAAAGAGCTTAGGGTGCGTGGAGTTGTTGCTGGCGAGAACTACCGATTCGGATATAAAGCAGCCGGTGATGCATTGGAGTTAGTAAAGCTGTGTGAGGAGTATGGAATGGAAGCTTACATTATAAAATCTGTTATGGACAAGAGTCATTTCTCTGCAAATATAAATTCCAGTACCAACTCCAAAGAGAGAGGACAGGTATCNTCTACCCGTGTTCGCGAAGCCCTTGCCGTAGGAGACATGAGGTATGTCTCGGAGCTTTTGGGGAGACCGCATCGTCTCGTGTTAATGGCCATTGACCAAGATAGGTTCAGTGTTGGCCAGAATAAGGTGTCTGCTCCTAAGTCTTGCTTATTGAATCTAGCACCAAAGGAAGGTTTATATGAGAAGTGTTCACTTTTCCTTGGTCAAGAGAATGTTATGCAGTGTAGAGTAATTATTGACAGCAAGTTTGTGCATATAGAAACAGATTACGGAGGTGAGAGTGATATTTTTNGCACTCAAAATTTGCAGTGCTTGCATATTGAATTTGGTGATTCCACCAATTGATTCAGTTTAGATCATTGTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00103	307770	310404	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009231 riboflavin biosynthetic process

molecular_function
GO:0003919 FMN adenylyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000103s00007468.1	PF06574.7	FAD_syn	106	246	2.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.484
SRR1783600	control	1.521
SRR1783602	moderate drought stress	1.403
SRR1811619	moderate drought stress	1.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.848
DRR006520	Root Summer glycyrrhizin high producing strain	2.779
DRR006521	Root Winter glycyrrhizin high producing strain	7.373
DRR006522	Root Winter glycyrrhizin high producing strain	7.499
DRR006523	Root Summer glycyrrhizin low producing strain	2.067
DRR006524	Root Summer glycyrrhizin low producing strain	2.033
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.193
SRR2868004	Drought Stress (root)	7.997
SRR2967015	Control (root)	7.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.180
SRR9715740	Leaf	10.660
SRR9715741	Leaf	7.726
SRR9715739	Root	1.759
SRR9715742	Root	1.794
SRR9715743	Root	1.629

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.608
SRR8749028	MeJA induced 9h	4.591
SRR8749029	MeJA induced 9h	4.097
SRR8749030	Uninduced	2.999
SRR8749031	Uninduced	3.052
SRR8749032	Uninduced	3.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.249
SRR8400027	Control - Root	5.213